HsaINT0145205 @ hg19
Intron Retention
Gene
ENSG00000133812 | SBF2
Description
SET binding factor 2 [Source:HGNC Symbol;Acc:2135]
Coordinates
chr11:10015468-10019926:-
Coord C1 exon
chr11:10019813-10019926
Coord A exon
chr11:10015546-10019812
Coord C2 exon
chr11:10015468-10015545
Length
4267 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGA
5' ss Score
5.24
3' ss Seq
ACAAAACTTTTTTGCTTTAGATT
3' ss Score
7.87
Exon sequences
Seq C1 exon
TTAGATGTAATCATAGCAGATTTGGATGGAGGCACTATTAAAATTCCCGAATGTATTCACCTCTCTTCCCTCCCAGAACCACTTCTACATCAGACTCAATCAGCTCTTTCTTTG
Seq A exon
GTATGACATATTTTTGTAATAGTAACTTTCTCTTTATTTAAATCTGAAGCTAAGATAGCTAAAATTAAAAATGTTTGTCAATGCAGTTTGTTACTTTAATTTAAAGAGAGCTATATATTTGAAACATGAACATAATCTCATACAGTATTTAGAATTCTTCATTTACTAGGTAGTTATCTAAAGCATATATTTTGGATCCTAACTGAATATTTGTTCTACATTCCTTCCTTCATTCAGCATACAGGACCTAGTACTGTCCTAGGTATTGGAAATTCACCTTTGAAAACAAGGCTCTGCCTTGAAATCCCTGATTCCCCTAAGATCCCCCATTAGATGTTGGCTTCTCTTCTCTAACCTCCCTATTGGCATCTCATTCCTCTTTGGTACCTACAAAACACTGTAATATTGTCTTGCCAATACTTTCAGGTTATTACAGAAAGATGTGTCATATTGATACATAAAGTGTCCAAAATTCATTCTTTTTTTTTGAGACGGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCACGATCTGGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACACCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTGCAGGCGCCCGCCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACTGTGTTAGTCAGGATGGTCTCGATCTCCTGATCTCGTGATCTGCCCGCTTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCAACATTCCATTCTTAATGCCATATGAATAGAAATACCAAAGAAGAAGTATATGCTACATTCAAGCCAAATAAAGCTTTAAAAAATCTTGTGGCTTGGGTTTTTCTCATTGAAACAAATTTAAATTTTTTTGCAGTTATTTTACCTTAGCCAAATTTTGAAAACAGTATTTTGTTTTACTGATAGCCTTTTAGGTGCTTATGATCAGAAAATTGAACTGTAGAAATTCTGCATTGCTTTTCAAGATATCACTAGAACTAAGGCCTTAATAGTCTACTTTAAGAATATTTTATTCTGGGCTATTTAAAACATTTTTTCCCCTCTTAAATAGAAACTTAGAAGCCTAGGATTACCAGGAGGGATTTTATTCTCAGAAAACTTTCAAATTTGTGTTAGTCTTTTTGTTATCATGGTGGTATCTATGAAATGGGAACAGTTAGAGAAGACTGACTTTTCCTTATATAATTTGTAATCTGAAATGCAAGATGTGATAGAGTGCAAAAGACACTAGTGTGGGATACAGGATACCTGAATTCCAGTCTGTGTTCTGCCACTTGGTATTATTGAGAATCACATTTTTATCTCTAGGCTGTCTCCTGGTCTTTACCTGTAGGTTGAATGTTTTTACAGAGATGACTAGGTGATTGTTTGCCAAAATGAAGCATGGTGATGATTTGGGGTAATATGTGGTCAACCTTTTTTATTTTAATAATTATGTTTTTATTATAATGTGTACTTAAAATAGCATATAGAACCTGTCATTGCTCAACTATCATCTAAGAAAATACTGGGTTTAAGAAGGCGAGTTTGGCAGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCAGATCACGAGGTCAGGAGTTCGAGACCAGCCTGTCCAACATGGTGAAACCCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGCGCACGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATAGCATGAACCTGGGAGGCGGAGGTTGCAGTGAGCCAAGACTGCGCCACTGCACTCCAGCCTGGGTGACAGAGCTCGACTCCATCTCAAAAAACAAAATAAACAAAAAAAGAAGGTGAGTTGATTTAAAGACAATTTAAAGAAAAATATTAACTACATAATTGCATAGATGGTATATGGATATAGCAAAAGCTGAGAAGGTAGTATTTGAATGACTGAAGAAAGTTTAATGTTTCTAGAATTCCTACAGTGATTAAATCTTATGTGTGGTTACTTACTAGTGATATGAATAGTTATTTAGGGGTTAAGTAGCAAAATTAACAAAGATTAAGATTGTACTTCTTAAGCCAATGGCTCCTGGTAAGGGTTCTGCTGCATACTCGTATACCTAAACCTGCAACACCCGTGCCACCAAATTTGATCAATGTGTAAAATTCCTTTTTGGTAAAACTGAGTATACGTATTGTTATAGTTACTAAGCACAGTGGTGGATTAGATACTACTTAATGTACTGTGAATAAGAAATAGGAGCATACGGCCGGGTGCGGTGGCTCATGCGTGTAATCCCAACACTTTGGAAGACTGAGGCGGGCGGATCATCTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACATGGTGAAACCCCGTCTCTACCAAAAAAAAAAAAAAGACAAAAAATTAGCCGGGTGTGGTGGTGCACACCTGTAATCCCAGCTACTCAGGAGGTGAGACAGGAGGCTCACTTGAACCCAGGAGGCGGAGGTCGCAGTGAGCCGAGATCACGCCGTTGCACTCCAGCCTGGACAACAACAGCAAAACTCTGTCTCAAAATAAAAAAAAAAAAAGAAAAGAAAAAAAGAAATAGGAGCATAATGTATTGTCAAACTAGACCAAAAAGAGACTAAATTTCATGGATGATTGGGAGCATTGACACACAAGTATATAAGCTTTGTTTCATTCGTAAATAATTATAATCAAATGGCAACACTGTACTTAAACTGTGTAATATGGATTATTTTGTAGACACTAAGATATTTTGTACTGTGGTAGTGATTCAGTGACTTGAACTGCCAATATTTTAGTGTTGCCTTTAAGTGTTGCTTTGAGTCTTTTGGTCTATTCTCAGCATAGCATCAAAAATCTTAGTAGTTGAAAATGATTCTGCAAGAAGAAAATTTGCTACATACTGATATAATTTCATCTTCTCTGTGCAAGTCCTTCACAGGTCCTTCTTTCCCAGATGCTCCCCAACCTGCTTTCCTTCAAAGCCTAACTCAAATGTTACTTTGTTTTTTGTTTAGTCTTCCCTAAGTTGAATTAATTACACATTTCATGTATTGCACTTTATATATTTTTGCACTTCTGTGACATAGTTTTATACTTTCACCTGTCTAGACTGCAAAGTTCAAAATCTTATTTTCTGTCTCCTCAGTAATTTTTATTTTTTTTTTTTTGAGACAGAGTCTTGTTATAACTGTCGCCCAGGCTGGAGTGCAGTGGTGCGATCTCAGCTCACTGCAACCTCTGCCTCCCAGGGTCAAGCTATTCTCCTGCCTCAGACTCCCAAGTAGCTGGGACTACAGGCATGTGCCACCATGCCTGGCTAATTTTTGTATTTTGAGTAGAGACAGGGTTTTACCATGTTGGCCAGGCTGGTTTCAAATTCCTGACCTGAAGTGATCCACCCACGTTGCCCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACTGCACCTGGCCTCTCCTCAGTAATTTTTAATTACACTTAGAAACATAAAAACAAGCAGCTGTTTTTAAAAATTCAACTATATAGACAAATAGCTCTGGCCTAGATTATTCCCTTACCAGAAATGACTACTATTTTATAGTTTAGTGTATTTTTTTCAGAACTTTTCATTTTCATATATATATATATATGTACATATATAGATTTAGGGTTTATTTTGTTTTATTTTCAAATAAATTAGGCCATACTATGTGTATTTTTCTAGAACATGTTTTCTTTTCTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCAATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCCACCACCACGCCCGGCTAATTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCGAACATGTTTCAACTGAATATTTTGTCTTGGAGATCTTTCTACAATAGTACATATAGAACTACCCCAGCTAATTGAATTGTATTCATGGAGGGAATATATTATAATTCATATGCTGACATTTTCATCTTAATGTCTCAATAATAGATTTCATTGATATTATGATATTTTACATAACAAAACTTTTTTGCTTTAG
Seq C2 exon
ATTTTACACCCAGATTTGGAAGTAGCAGATCATGCTTTTCCTCCTCCACGAACAGCTTTATCCCACTCAAAAATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133812-SBF2:NM_030962:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=PD(5.5=26.3)
A:
NA
C2:
PF0345514=dDENN=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)