BtaINT0128955 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015553 | SCAI
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:HGNC:26709]
Coordinates
chr11:95961204-95964589:-
Coord C1 exon
chr11:95964491-95964589
Coord A exon
chr11:95961301-95964490
Coord C2 exon
chr11:95961204-95961300
Length
3190 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
TTTCCTTTAATCTACCACAGACC
3' ss Score
9.27
Exon sequences
Seq C1 exon
CCTACGCACATCTGAGACCAGCTATCTGAATGAGGCTTTCTCCTTCTATTCTGCAATCAGACAGAGATCTTACTATTCTCAAGTCAATAAAGAGGACAG
Seq A exon
GTATGCACCTTCTGTTTTAGAAAGAGGAAGATAAAGCACTGAAACTTTTTAGTGTGTGGAAATTAGGCAGAAAAGCATGCATTTGTTTATAACTTTTATTCATTTAATGGGCTTTATTGAATGCCTGCTATATATGAGGCCTTCTTAAGCATATGGAAGTGTGTTACCTAAAAGCAGTAAATATCATGGATGTTGTGAGAGATGTCACAATACCAGGCTAGGGTCAGAGCCCAAAGAAGGGTGGGTTATTTCTTTATCAGAGATTGGGGTCACATGAAGTTTCATAGAAAAGAAACAGCTCCAAAATGAGGCTTAGCGGATACCTTTGTTCTGTAGCCTATATCATCTTAGTCTGTATACGTTCAAAACCTATTGGAAACTGTCACATAGGGACTAAAGAAAAATGTATAATGGTGTTTGATTTTTCTTTTATAAATCCAATACCATTTTACAGTCATGTAGCTTCACTGTTATGGAAAAAAAGTCATGTTAAAGTTATTCATCCCCACTTATTATGTGTCCGGCTTGGGTAGGAGAAGAAAATGAAAAGAAGCTGTACAATCATCTTTTTTAGATGATTACCTTTTCATGGGAGTCTCAGACACATTTGGGGTACAGGTAGATTCAGATGAGGATAGAGTTGTTGAAATCAGGAATCTGCTGGAGAATCTTTGTTGCTAGGATTCAAGAATTGTTGAAAGATCTGAATATTCTCCCTACTCCCAGTAACAGAACTCACAGTCATTATCTAAGTGAAAAGATTATATTCTGTTAGAAAAAGAATAAAATGTAGTTTTGACATTTTTCTAGAGAATACTTTGTGGTTGGCTGTCATAAGCTTTCCAGCTAAATAGCAACATTTTGGGGAAAGCCCCACTCTGGTAAATCCCCTTCATTCCCTTGCAAATCTTGTTCAGACTTGTCTGGAGAAATTTGCTTGAAACAAGGTATGTAGACGCTGAATTCTACATTTTCCCCCCAGGTCTTTTTGGCTTTGCCTTACTTCATGAAGTTGCATCAGTTACTTTTCTTTCAGAATTTCTTATGGCTTGCTTCACATATTTTCACTACAGATACATTTCTTCCAAGTCCCCCCCCCCTTTTTTTTTTTTGCATTCATGTTGTATAATTTCTCTGAATTCTTGATGAGATAAATTATCTCTCAAAAATACAGAAGGGGTATGTAACACTTTATTGAGTGAAAAATACATATAAGCAAAGACCTATTTTAAGCAATAGTAAAATACCTTGCATAATTCACTTTTATGCATTTTCTAATTTGACACAAGGGAAATTGGTCTTAGGTCCCTTGGCTTAAAACCCAATAGTTTGACTTAATAAAATCACTTACTGTCCTAAGAGCAAACCAGCTCATATGACTTGTTTCTCTGTGCTGCCTCCTAGAGCTGGGCAGATGAACTGAGCTAGAATTGTTTGGAACCAGGACAATGAAATCTCTTAGGCTCAGAATCAAACTAACTTAGAGTCAAAGGACACTTCAGTATATAAAATCTTGATTTTGTTCCCTATACTTTAGGAAGGAGTTTGTTCAGTTGGTAAAATTGGTTGTTTCTTAGTTCACACAGGGCTGGGGGCCATCAAGGTAGCAGTTGGTGACAGCTGCTAAAACCAACAGCTGGTAGATTAAAACTAAGTAAGAAAGTATTCCACAATTTCACAGTTGCTTTAAGAGGCATCTCTCCTCCAGAGGTCAAGTTCTCCCTGCATCGTCTCAGTACCGAAGGAATATGTCAAAGCCAGGAGGAGTGGTACGTTCCACCGATCACCACGGTGACTGCCTGTCACCAAATGCAGACAGCTCTCAGAATGTCTCTGTTCCACGGCCTGTCCTGTTGAGTGTAGGAGACGTTTGCACATAATCACTTGTCCGAGCTGTAAGCCCCAATGGTTATGAAGGACGAAGGCTGAACCTGGTTAGAGTTAAGACATGGAGAAGGTGAAGTTTCTGAGTGTACAGAGGCTGGAGGGAGACGTTGCAGTCTTGAAAAACAGTTTCTCAGGCAGATGTGTCAAGAGTCAGCATCTTACAATTAGTGGTCCTAGCAGGTTGGACAAGGCTGCAATTCTGGCATGCCAGAAGGACTTTGTCAGAGAGAGTCTTGATGGCCCCTCTGGCAGTGACAGTACTGGAGTTTTGTTTGATAGTGGAAAATGTGGATCTGAACTTGAAAACTTGGCCGCATCCCAGTCTTGATGCTTATGAGGAGGACTTGATGTGGACCCTTCCCAGTGAGATTCACATGAGGACTTCTTCTGCAGCAGGCAGGGCTGGGGGCCGTCATTCAAGTTTTCAGGCTTGATAGGATTGCCTCTCAAGTGTATTGAGTGGATGACCTCGTATTTTCCTGCCTACTGTCTTCTTGTCTTCCTATTTATTGTCTTAATATAAACATTACTCTCTCTGGGAAGCCTTCTCTCACCAAGATCCAGTTCTGTGGGCTCAAATAGCATGTTTTGTTTCTCCTATTGATGCTGCCAAAATCTTGACTTTCTCTGCCCTCTGAAGCCGAATTAAAAAAATATGGAGACAGAGTTTGGAGGAAATAGAAAGGTGGCTTAAAATCCTCAGCCAGCCTAGGGGAGAACACAGTAGGCTTCTGCCTCCAGAACTGTGTTATTCCCCCACCCCGTGAAGAATCTGGGGCAGAAAAGCAAATTTAGTTACAGGCTGCAGATTAGGAATGGTTAAAATAAAAACTAGATGTGACCAGGCCTGCCCCCTCTTCTCTTTCTTCATTCTCAGGAAAGAAAAGAAAAACGCATTCCTCTTCTTTTCCTTTTCACTGCAGCGCTATCATTGTAATATTTATTCCACTGTTTTAAGTATTTATCTGTCTCCTCTATATTTTACATACGTTTCTGTCTATAAGATCTGTGAGGAAGGGACTATGATATCGTTTCTTTTTTTAATAATTTTAATCTACTATTTAACATGGTACCTGGTGCATCTAAGTTTCAGTAGATAGTTGTTGAATAAATTAATGTATGAATGAACAATGTAATGAATCATTGGTAAAAAATGTATTTAAAAACTATAGATTATATGAAACTGTTTATAACTGTGCAAAACAGGATCAAAAGAGTTTAAAAACTATCAGAAAGTTAGAAAAATCAAGTCACATAATTTTGTTTTTAATGTAATGAATAATTTTCCTTTAATCTACCACAG
Seq C2 exon
ACCTGAGTTGGTAGTTAAGAAGCTACGATACTATGCAAGATTTATAGTAGTTTGTCTTCTTCTCAACAAAATGGATGTTGTGAAGGATCTGGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015553:ENSBTAT00000020665:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(6.7=100)
A:
NA
C2:
PF120703=DUF3550=FE(6.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development