GgaINT0125703 @ galGal3
Intron Retention
Gene
ENSGALG00000001037 | SCAI
Description
NA
Coordinates
chr17:10264578-10265132:+
Coord C1 exon
chr17:10264578-10264676
Coord A exon
chr17:10264677-10265035
Coord C2 exon
chr17:10265036-10265132
Length
359 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAT
5' ss Score
7.88
3' ss Seq
GTCTTTGTTGTTGTGCTTAGGCC
3' ss Score
9.84
Exon sequences
Seq C1 exon
CTTGCGCACTTCTGAAACCAGCTATCTCAATGAAGCTTTCTCCTTCTATTCCGCGATCAGGCAGAGGTCATACTACTCCCAGGTTAACAAGGAAGACAG
Seq A exon
GTATATCTGAATGGATGCCCTTCTTTTTTTCTTTCCCAAGACCAGAATAATTTATGTGAGTAGAAAGTAATTATAAAACATAGGATCATAACTGAGATGAAGTCAGTGTTGTTGGAGGAAGTTTTTTTTAACCCTTCTGCCATGATTAAATTCCTGAGTATAAATAAGAGCTTTACAGGAAGACTGGAGAAATATTCTCATGTGGACCTACCTAGAAGGTTATTAGCCCCAAATTTCTGACATCTTGAGTCCTGCTCAGTGTTGATGCTGGGACCTAGTATGCTGTGTTGTATGCTTTTCCTACTTGTGTTGTATTCTAATCTCAAATTTCACTATGGTGTCTTTGTTGTTGTGCTTAG
Seq C2 exon
GCCTGAATTAGTGGTTAAGAAGCTGCGTTACTATGCAAGGTTTATAGTGGTTTGTCTCTTGCTCAACAAAATGGATGTCGTAAAGGACCTTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001037:ENSGALT00000001535:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(7.0=100)
A:
NA
C2:
PF120703=DUF3550=FE(6.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCGCACTTCTGAAACCAG
R:
ACAAGGTCCTTTACGACATCCA
Band lengths:
192-551
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]