BtaINT0129741 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011275 | SCUBE1
Description
signal peptide, CUB domain, EGF-like 1 [Source:HGNC Symbol;Acc:HGNC:13441]
Coordinates
chr5:114674027-114678141:-
Coord C1 exon
chr5:114678025-114678141
Coord A exon
chr5:114674150-114678024
Coord C2 exon
chr5:114674027-114674149
Length
3875 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCCCCCACCCGGCTCCGCAGACA
3' ss Score
7.7
Exon sequences
Seq C1 exon
AGACATGTGCGGTGAACAACGGAGGCTGCGACCGGACGTGTAAGGACACCGCCACCGGCGTGCGCTGCAGCTGCCCCGTGGGGTTCACGCTGCAGCCGGACGGGAAGACGTGCAAAG
Seq A exon
GTGAGCGCGGGCCGGCCCCCTCGCCGGCCTGGGGCGGGGCAGGCGGTGCAGGTGCACGCGGCCGCAGCGGTGAGGGTCAGAGAGGCTAAGAAGAGGGAGTCGGGCCCAGCGCTCCACAGTGGGGCTCAGGGGCCCCTGGTTCCACTGAATATCGACAAGCTTAAGTGGGGCTCTGATGTCAAAGGACGTGGCTGCACCCCGGCTTGAACAAGCGGGGTGCCTTTACTTGGGGCTTCCTGGGCCGGCAGAAGTTCCTTGTGGCCTCCCGGGAGCCAGGCGGCCACTCACCTTAGCCGGGCAAGTCTTGCAGGGCTGGGGGGCAGTGGGCCACAGGGCTCAGACCAGGACAGGACGGTCTTCTTGTCAGCACTAGACAAAAAAAGAACACTGTGCACCCGCCTCCCCGGAGGAGGGAAGGTCGGGGGCGGGGGTCTCAACTGAAGGACTAAGGATGAAAAAAAATCAGAAACGGGTTGGGAGGATCAGGAATGGGCTGGTCTGCTGGCTGCCGGAAGCCAGAGAAGAGTGAGCTTTCTCTGACTCACCCTGCCAGGAAGTGGGCAGGCCTGGAGGCCAGCGTGGAAGGGGAGAGGAACTTGAACGTCCAAAACCCAGTGGGTAAAAACATTGACAGCAGAGGCTTAGAGTGACTTTAAGGAGTCCGAGATGGGCTTTTTTGAAGCCTGCAAAAATAGACGGGGTATGACTTCCCCTCCCCAGCCACTTTGCCGGGAAGAACCTAGTGATTATTGACAGAAATAACAGTTCTTGCACCTATTTATTTGAAAATAAAGCCCTTCTGTAGCCCCCGCTCAGCCCACTTAGAGTGAGATGTGCTCCCAGTGGGCGGGTGGGTGGGCCAGGCTATCTGAGGCCTTGCACATGGGCTTGGAGCCAGGAGGCCTGGCCCAGGTCCACTGTCCAGACCCTGCCATCCTCACTGCCCAGCAGCGTCACAGCAGGCCTGGCCAGTTGCCCTTGGAGCCTGGACAGAAGGTGGTAGAATCGTGCTACTCCACACCCCTGCAAGGCCCAGCGCCAACCCAGGACCTGAGGGTGGGGCAGGCTCAGTCCTGACACAAGGCCAGGAGCTCGCCTCTGGGAGCCGACCTGTCTGGACCGGACAGGAGCCTCAGCAGTCACGTGGCCCCGGAGGAGCACTCAGGGGTGCTGAGTGCTGCCCCCTGCCCATCCACGGCGGGCCGTGGGGCATCTGTTCTCACCCACCTTGGGGCTAGGGTAGGGGGCGTCCACACAGGGGAGGGGAGCTGTGCGCACAGCCCCAGGCCCACCGGTCTGAGCCCCTGACCGTGTTTCCTGTGATTCCTCTTAAAACAACTGGGCCCTTTAACCAGAGCTGCCCCTTCGCCTTCAGCCAGACCTCCTCACTCCGCTGCCCTGGAGTCGGAGCCTCTGGTTCACTCAGGCCCCAGGTTTCTGGGCTCCTCCCCTGTGCAGGTGCAGGGCAGACCGTGAATGAAGCCGAGACTCCTTGTGCCCAGGGATTTTCTACTGAGTAAATAAGACAGAGTTTAACGTTTAAAGATCGCCAAGATAAGCATGTATCACAGACCCCTTGGTGCTGGGTAGAGAAGTCCCGCGTGGCAGGAGAGCGAGGCTTGGCCTGGCCTGGACCGGGGGTGGGGAGGGAAGGGGCCGGAGGAGGAGGCTCTAATCCTGGCCCACGACTGCTGTGCAGAGGCCAGGGGTTCCAGGACCCAGAGCAGCCAGTGCGCCCAGATCTGGGGGAAGGGGTTGGCCCTTCATCCTGAGATGCTACTGGGCAGGAGCAGCGTGGGCCGGGCTTTTGTTCTGAGACGGTCCCTGCCACGTTGGGGACGGGGGTGCCCGGCTGTGCCCCCTGGGTGGGATGGGCGGAGGGGGACAGGCGCAGTCATCCGACCGTGTGTTCCTGCAGCTCACCCCTCCCCTTCCCCCACATACACTGATGCTCAAACAGTGGGGGAGGCAGTGAATGTGCACCTGGTGGCCAGGACCCCACCCTTTCCTCCGCCTCTGACTTTTCAGTCATTCACTCATCCATTCATTCATTCGTCCAGAGCCTCGTTCTGGGCAATGCTTCTGCACAGGCCTCCTGATGGGCCCCGGGGCCGCACTTGGGAGCCCGATCTGCCAATTCTCCTCTCCCAAGGGGAGGTCCCAAGACAAGAGAGCAGTGAACTGGAGAGATTGTTCCGGGGAGGGGGGCGCTGTCCAGGCAGGAGCCAGGGGCACAGAGAAGAGGAGGGCCTGGCAGCCAGGCCAGGCAGCCGAAGGGAGGCCACGAACCTCTGCGGCCAGACAGGGGGCCTCTGGCCGCTGGCGGGCGGGGCTGGGTGCCCACAGGGAGCAGGAGGGGAGTCTTCGAGGGGCGGGAGGTGGAGGGGGGCAGAGGCACGTCCGAATGAAGGCCATTGCCCCCTCACTGTATCCGGGGCTAGAGCTGGGGACGAGTGCTCCCCCAGTATGACCCCCAAGCAACCTGCTGTACCAGCCGGGGCCTCCAGCAGACACACCTCCCACCGCCTGGCTGGCTGTCATGAGAGCCCCTTGTTATGACAGCTGACAGGCCCAGGTGGGTACCAGGGTGGGATTAGAGTCATTCCTAAGGAGGCAGGTCCTCTCTGCACATTCAATCACAGTGAATGATGCTGAGAGGTGCCTGCTAGCAGCCCAGTTTGCAGATGGGGAACCTGAGGCCCAGAGAGGTACCTTTCCCTGCCCAGGGTCACAGAGCCAAGAGGCGCCTCCGGTCTCCTGCCAGAGGCTTCTAGGCAGAACCTCCCCGGTTGTCCTGTGACCGCCCCCGCCAGGAGAGGGGCGGTGGAAGCTGAGCCTCTGTCCTGGAGAGGCCCTTACTTTGAGCTTGACACCTGCTTCCTCTGGAGGCTGCAGGGCCAGCAAGCCACACTGGAGGGACCTGTCTTTGGAGTCAGCTGGGGCTGGGCTCACGACCCGTGACCTCCCCGCTGTGAAGCGGGGACTCTGGCCCCGGCTTGTTTTGACCGTCACACAGTGACTTTTTTGCCTGAAAGCGCTTGGCCCGCTCACCAGCACAAAGTGGTACCTGGTAGGCGCCGCGACCTCCAGAGGGTCCTGCTGCTTCCTCCCGGGCGTCAGCCCCTCCTTAGGCAGCTTTGTTCCTGAAACATGGGTTCAGGTTAGGGGTGCTCGGGAGGGGTCTGCCAGGGTGCCGCCACCGCTCGTGAAGTGCCGAGTGAAGAAACAGCTCAAACCACAGGCAGACGTGGGGAGGGAGAAGGGCGAGGAAGCAGGCTGGGAAGGGAGCAGCCTATGGACGCCCGCAACACCTGGGGCCAGTTGCCTCCCAGCCTCGGTCCCCTGTCTGTAAAGCCGGAGCAGTAAGCCTACTTTTTAAAGAGCTGGTTGGGCCAGCACCCTGGGGATGAGATTCCATTTCGTCCTCACGCTGTCCTTCCAAGTAGGGGCGCTTCTGATCCTTGTTCTCACAGACGGGGAGCTGAGACCAGGGGTCCGGCAGCTCGGCCGGAGTCACGGCTCTCAGGCAGTATCCATCTGCTCCAGGCCTGCTACCTCCGGGAATGGAGGGGCGTGGGGGGCGTCACTGACCCTGCTGTCTGGCTGGGCACAGCAGACATGAGTTCCCCGCCCCCTCCTGCACACACATGCCAGGCTCACCAAGTCCCCGGTGGGAGGGGGTCTCCCCTCCGCCCACCCCCCTGCAGCTGTGAGCCAGGCCCCCTTCCTGGGCCCAGCTGGGGACCCGAAGCAGCCCCCCGGGTGGGCAGTGGGCCAGTTAGGGAAGGGCGGCTCTGGGCCTCGGTCCTGCCTGCCCCTGGGGGCCCCAGCCCACACTCCTCGCCTCCCCTACACCCCCCCACCCGGCTCCGCAG
Seq C2 exon
ACATCAACGAGTGCCTGGTCAACAACGGAGGCTGCGACCACTTCTGCCGGAACACCGTGGGCAGCTTCGAGTGCGGCTGTCGGAAGGGCTACAAGCTGCTGACCGACGAGCGAACGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011275:ENSBTAT00000037639:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=90.0)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]