HsaINT0146188 @ hg38
Intron Retention
Gene
ENSG00000159307 | SCUBE1
Description
signal peptide, CUB domain and EGF like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:13441]
Coordinates
chr22:43231753-43238954:-
Coord C1 exon
chr22:43238838-43238954
Coord A exon
chr22:43231876-43238837
Coord C2 exon
chr22:43231753-43231875
Length
6962 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
ATCCCCCTTGGCTCCCACAGACA
3' ss Score
8.9
Exon sequences
Seq C1 exon
AGACGTGCGCAGTCAATAACGGAGGCTGCGACCGGACATGCAAGGACACAGCCACTGGCGTGCGATGCAGCTGCCCCGTTGGATTCACACTGCAGCCGGACGGGAAGACATGCAAAG
Seq A exon
GTCAGCATGTGGAGCTGTGTGGGTGCCCCTGCCTGTACTGGCCTGGCCAAGAGCCTCCGTGTGCTTGCATAGCCGGGCCCAGGGCTGGGCTGAACGGGGGCCACGTGTAGCTGTGGGAAAGGACACGTGGCAATCATTTGCTTTGCTGTTGGAGAGGCCAGGAAGAGGGAGGGCTGGCCAGCAGCAGGGTCCCCAGCAGAGTTCGAGAGAACACAGGTCCCACGGCACATCAGCAGGTTCCTGGGCCAAAAAGGCACTGATGTCAGAGAATTTGGCTGCACGCTGGGTTAAACAGTTAAGCCAGCGTCTCTACTGTGGGACTTCCTGGGCCCTCAGTGATAGTGTGGCTTCCCAAGGCGCGTAGAATGTAGCGCGTTTCCGAACCCCTTGACCTTTGGTTGCAGTGGGTCTTGCAGAGCTGATGGGGACAGTCTGGTGTTGGGCCATCTGGGACACACAGGTCTACTCATGCCAGGAAAAATAAGGACAGTGTGTCACTACTAGGGGGGCGAGGCTAGGGGGATCCCATCTGAAAAGATAAGGACTCAGGACTTCTGCTTGCCATCAGAAAATGAGGAGTCAGGAAGACCTGAGAGTGACTGGTTGAAGGAAGGAGGGACAGGGCTGGCCTGCTGGTGGCTGGCAGTGAGGGAAGGCAGAGGTGTATCCTCCCACTTGTCCCCTGAGTCACCCCACAAAGACTTACTGAGTACCTCCTGGGTTGAGGGGACCCTCAGGAAACAGGAAGCCCAGGGAGCTGGGAGAGGAGAGCTGGGTGGGCTCTCGAGACAGCCCTGCAGATGAGGAGGTCCAGCTACCCCCAAAGGACAGACGGAGCCCCAAGAAGCTGTGGGCCCTGGGGCAGGGTGTTAGGCCTGAGTGCCGGAGCCCTCTGTGCAGAAGGGTGAGGGGCAGTGCTCAGTGCCCCCAGCATCACTCCAGACCACCCTCCAAACGCCCCCACCCCAGCGCTGGGCAGTACCCCCACACTCTGCCAGGAAGGGAGAGCCTAGAGAGCAGGGCGTGGAGGGGAGAGGAACTGGAACTTCCAAAGTCCCATCGGGGAAAATATTGAAAGTGGAGGTTAGGGTGACTTAAAATAGCTTGAGGTGGACTTTTTTTAAGCCTGTAAAAATAAATGTATTTTTGTACAGTGTATGACTTCTTCCTTGCCAACTTGCTGGGAAGAACCGAGTGATTATTGACAGAAATAACAGTGCTTCCGCCTGTTTATTTGAAAATAAAGCCCTTCTGTGGCCACCGCTCAGCCTGTTAATAGCCTTGGTGCGTTCCTGGCAGGCAAGTGGGCAGGTGGGTGGCATCTGAGTCCTCGCCACATGACTCAGTGCCAGGAGTGACTGGCCGAGGAAGCCCAAGGTCTGTGCAGATCTGGGCATCTTCACAGCCCGGCGATGGCACAGCCTGCCAGCATTTGCCTTCGGAGGGCCAGAGGGGCAGGCAGAGCTTAATTCCTTGGGCAAGGCTGGGGCTGTTGGAATGGGGTCTGGAGGCCAGGAGCCACCCTGTCTGGGCCAGAAAGGGGCCTGGTGCAGGGCAGGCATGTGGCCCAAGAGGGGGCTACTGGGATTGGGGCTCCCACTGCTGCCCCCTAACCATCCCTCGGTAGCCCAAGGGACACTCGTTTCCTCCCACTCTGGTTCTGGCTCTGAGGGTAGGGTGGCGCTCAGGAGTGATGTCCACAGCCCCAAGACAACCCCCCAACCCCCCCCACCCCACCACATTTCCTTTGCTCTTCAAGCGGTCGGGGCCCTTTCACCAGGCTGCCCCACTCAGCCCTTTGGCCAGACCTCCTCCATGGACGCCCAGCCCTGGGCCTGTGGCTGCACTCAGAGCCCTTAGGGCCCTGGCTCCCACTGGCCAAGGTCAGAGATCATCTCACTCGCTCGCTCACGGAACAGGTGTGTTTTCTGGGCTCCTATTGTATGCGGGTTCCAGTGAGACAGGATGAATAAAAGAGACGGTTCCTGCCTGTAGGGGTCCTCTACTGAGTGCAGAAGACAGGTTTTCATTTTTAAAATCACTGAGATAATTGAGTATCACAGGCTGCTTGGTGTGGGATAGAGAAGTTCAGTATGGCAGGAGGCTGGGGGAGGCCGGGGAGGGCTGAGGGGAAGAGGCATTTATCAGGCAATGATGGGGGCAGGGGAAGCATTTTCAGCACTGTGACTGTTGCCAGAGGCCTGTGGGTTCAAGGACCTGGGACTGGGAAGGACGCAAAGGAGGCGGGCCAGATGGCGCAAGGCCCAGGGCTACCCTACAAGCTTGGCCAGGTCCCAGTCAGCACTGGGCAGGGGAGGCTCACACCCAGGTTTTCATTTTGAACTGACACTGGCCACAGTGGGGTCACAGTAGGGTCTGGAAGACCAACAGCCAGGCACAGCTGCTGTCACTCAGGCTCGTGGCAGTGCCAAGGCAGGACTGGCAGCAGACATAGAGAAGGCAGAGACTAGACATGTCCATAGATGCCCACATTTCAGCACCAAGGGACTGGCTAGAACTGCCCACAGGACCACCTCAGGGAGCCTGAGAAACCAGACGGTGGCCTCCAGCCCCAGGGTTGGTGTCATTGGTATGTTCCCAGCCCTGGCTGGAGAGGCACAGGCAGGAGGATTCCCAACAAATTGAAGACCCTGGCCCCAGGGTTTGGTTCCTCGGTCAGGTGCACACCCTGATCTTGGCAGGGTCTGGGGAGGATCTCAAAGGAGAGAGTTCAAAGGCTCCACGTTTTCTGAAAGCCAAAATGTCAATGTCAAGCAAGAGGAGTGGCTGGAGAACAAAGGTCACAGCGGGCTTGGACAACCCAGGGCTGCAAACCCCGGGCAGGTGGGGGTCACGTGGGCAGGTGGAGGCAGGGTTGGGAGAGTTGGGAGGTTTTGTCCAAATGTCGGGGACGAGGGGGGCCTGGAAGATGCGCCTAAGCCCTCGTCTCAAGGGCTCCCTGCTGGGTACCGTGCCCGTTTGGTGTTGGGAGGTGGTTATCTTGCTAATCGGTCCCTCCAAGAGGAAGGGGGTTCTGGGCCTCAAGAATAAGGATGCAGGACTGCTGCTTGCCGTTGGCAAGTGAGGAGTTGGGAGGATGGGAAAGTGACTGTAGCTGAAGGAAGCAGGGAAGGGCTGGGCTGCCGGTGGCTGGCAGTGAGAGAAAGCAGACGTGTATCTTCCCTTCCTCAGCGGGAGCCTGCATTTCCCTCAGGGTCACCTGCCCCTCTTCCCAGCATCTCCAGAACAATCTGGGAGAACCCCCCACCTACCGCCTGTTTCCTCTTCCCCCTCTGCAGTGCTCTGGGCCAGGCAGGCCACAGCCAGGGCTTTTACCCGAGTGGGAGCAATGGTGCCCTCGAGTGACCGCCACCTGGCCAGCCCCGCCTAGCAGCTGGCCCTCCCTGCTGGGCACTCCAGGATGGTGCCAGCCCATGACCCTGTGCCCTCCCTCTGCTCCCACCCAGAAGCCCTCCCCTACATGGTCCCCCACGTGAGATGGGCAGGAGGGAGCCAGAACCAGTGTCCTGTGCGTCCCTATAGCTCACCCCATCGCCCTGCCCCCATGCACACCCACTCAAGCTCCAACCCTGGGTGATGTACCCAAAGAGTCCACTCAGTGGCCCAAGACCCCACCCTTCCCTCAACCCTCAGACCCGCTCCATTGTCTGGAATCACCCTGACCCATTCCTTTATTCGGTGAGCGTTCCTAGACACTCACGCTGGGCCCTGGGGCACCAGACAGGAACAGCCACCCCCAAGTCTGTGTCCCAAGGCCCTCTCATGCCCCCAAAGGCATTAGCTCCCATGAAGAGGGAGCTACTGGCTCTGGAAAAACACTGGGAAAGGCTTTCTGGAAGGGCCGTTTTTCCCAGGGCTGGGGTCAGCAGGTGAGAGGGGGGCTGTGGCTGTACTGGGTGCGGTCACTGGAGTCCAGGCTGCCAGGGCAGGAGCCAAGCAGCCTGGAGAAAGGAGGCAAAGCAGCCTGGCCGGGCTGGAAGGGAAGCTCTGGGAGCCTCTGCAGAGGGAGGGCCCACATCCTAGCAGACTCAGGAGCCTCAGAATGCTGGCCAGCAGGCAGGGACTCAGCCAGATTTGTGTGCGGAAGGTGGTGCTGGCTGCCTGGTGTGGGGCGGTGGGGTGGGAACCCAGGAAGGAGCGGAAGGGCAGAGAGGTGCAAAAGCTGCACCCCAGGGGCCATGAGCCCAGCACCCCCTTCACTATATCCTGAGGTAGTGTGAGGAGGGGGCTTCCCTCCATCCTGACCCCCAGGCAGCCAGCTACACCAGCCCGGGCCTCAGGCAGACATGCCTCCCTCTGCCTGTCTGGTTGCTATGACAGCCCCTTAGCAGACAGGCCCAGATGGGGCAGGGGATGGGGCTGGGGGCTCTGGAAGGCCTGAGGCTCCACTGAGGAGGCAGGAGTGGTGAGAATGATCACGTGCTGCCCCTGTCTGCTTAGCAGCCTCAGCTCATTTCAGTTTGCTAAGGATGCTGGGAGAGGCGATGCTAGGAGAGGCACCATTTAGCAGCCCAGTTTGCAGATGGGATCCTAAGGCTCAGAGAGGTGCCTTTCCCTGCCCAGCATCACACAGCCAACTGAGGCAGAGTCAAGATGGGCCTCTGTTCTTCTACCTGAGACTTCTATCTAGAAATTCCCCATCTGCCTATAATCCCGGGGCTCGGGGGGAAGGAATGATAGAGATTCCTAAGCCTCCGCCCTGGACCAGCACAGCTGGGCTTCATATCTCTTTCTTGGTGGCTGCAGGGCCAGCGTGATGTGCTGCAGCAGGCCCGTCTTTGGGTTCGGATGGTGCTGGCTGAGAGCCGGCTCCTGCGTGTGGTGCTGTGACCTCATCTGTAAAATGGGAGCCTGCTGTCTGGGTTGTTTTGAAGGTCACACGAGATGATACCAGAAAGTACATGCCATGTCCCTCCCCGAGGCTCCCAGAGAGCCATGTGGGCATCCAGCCCTGCACTCCTCTAATATTCTTGACCAGAAATTGACCTCTAATAGCCTGGTTTTGTCATCACTGGGGGATGTTGCCTGGGAACACTGCTTTAGGACTTTGGGCAGGTATGGAGTCCAGCCTGTTTGGTTTGAAGAAGAAAAAGTGAGAGCGACATGGGCCGGCCTGAGGTCAGAGTAGCAGTGCCAGGAACAAGTTGCCTCTACGGGGCTCAGTGCCATCTTTAAAGTGGGGGCAGACTTACCTTCTGTACAGAGCGGTGCCAGTGACACTGGACAGGGCCCTTCAGGTACCTGGCTCAGCAACCATGCCCAGGACGGGCTCTGCAGATGCTGGAATCTGCGTCTGGCAGGTCTGCTGAGACGTGGCTGGTGACCAACAAGAGCTGATCTTCCCATTGTCCTCCTTGGAAGGGCCTCTTCCGCTACCTCCTTTTTGCTTCTGCAAGTCAGGGTGAGACCACCGTCGTGAAAGGCAGCACTGATTATTATTATTATTTTGTTTGAGATGGAGTTTTACTCTTGTTGCCCAGGCTGGAATGCAATGGCACAATCTTGGCTCACCGCAACCTCCACCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCTTCCCGGGTAGCTGGGATTACAGGCATGCGCCACCACGCCCAGCTAATTTTGTATTTTTAGTAGAGATGGGGTTTCTCCGCGTTGGCCAGGCTGCTCTGGAACTCCCGACCTCAGGTGATCCGCCCGCCTCAGCCTTCTAAAGTGCTGGGATTACAGGCATGAGCCACCGTGCCCGGCCAGCACTGATTATTTTTTTAAGCCACCCTGCAGTGTAGAAATAAAACCTCTTATTTTTGTTACTCACTGCTGGAGAGAGTCTGGAGGGGGTGGCCAGCATGGGGGCCTGGAGGTCGGGACCCAGGAGGAATTTGGGAGTAGCTGAGACTGTGTCCCTTGGAGAAGAGGCCCCTTGGGGACAGGGACCTCTAATGGCACAGAATGCCAGGCTGGCCCAAGGCCTAAGGGCAAAGCCCAGATGGGCCCGACAAGGGAGCAGGAGCATGGGGGCTCACAGGGGTCAGGGCTGTGTTTAGGGTGAGGAAGACATCTGTGAGGCATCGGCCAGCAGGCCATGCTGGGAGGGAGAAAGTTTCCTGTCCCTGGAGGTGTGCAAGCAGAGGCTGACTGGCAGAGTTGCTCAGGATGGCATCATTTATTACACGGGATCGGGCCAGGCAACCTTCGGAGCATACTACAACTCATTCACTGTTAAGCAAAGAAGCAGCTCAAACAAACAGGCGGGGAGTCAGGCTGGGAAAGGGGGGAGCGTCAGGCCCGCTGCATAGCCCAGCTCCCCACTTACCTTTTGAAGCCTCTTGAACCAGGTGCTTTCCCTCTCTAAGCCTCAGTCTACTCCTCAAACAGAGGCAAAAACACCTACTTTTTGAAAAAAGTTTCTTGAGCGCTGACCAAGCACCGGCACCGTGGAAGTGTTTTTTCACCTAGTCCTCGTGATATCCTTCAAAATGGGTGCACTTCCTGTCCTCGCTCTGCAAGCAGGAGACCAAGGCTCAGGGGTCCGGGAGCTTGCCGAGGTCACCAGAAGTGGTGCCTGCCTGCTCCAGCCTCCCTGCTGGCCAGGCGGCCTCCCTGAACCTGCAGAAGAGAGGACATGGGAGAGTCGCTGTCCCTGCTTTCTTGCCGGGCACAGCAGCCATCAGTTCCTCTCTACTCAATGTCTCACATCCCAGGCTTGCCAAGTCTCAGGGGAAGTGGTGAAGCTTGGGGAGCTGGCCCTTCCCAGTACAACCCAGCCCCGACCCTGACCCCTGCGAGACAGGGCCCCCACCCCTCTGCACAGCTGGGGAGCCAGCAGCCAGCTTGGGAAGTGGGCACCAGGCAACTCAGGGCAGTGTCATCCCCTGCCGCTAGCCTGCCGTCCCCCCGCTGGTCACACAAGCTGATTCTCCTGGCTCTCACTCCTCCATCCCCCTTGGCTCCCACAG
Seq C2 exon
ACATCAACGAGTGCCTGGTCAACAACGGAGGCTGCGACCACTTCTGCCGCAACACCGTGGGCAGCTTCGAGTGCGGCTGCCGGAAGGGCTACAAGCTGCTCACCGACGAGCGCACCTGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159307:ENST00000360835:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.001 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=90.0)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development