BtaINT0130219 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000854 | SEC16B
Description
SEC16 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:30301]
Coordinates
chr16:60751341-60756508:-
Coord C1 exon
chr16:60756453-60756508
Coord A exon
chr16:60751413-60756452
Coord C2 exon
chr16:60751341-60751412
Length
5040 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TCTCTTTCGTCTAATTCCAGGTG
3' ss Score
9.91
Exon sequences
Seq C1 exon
TGTCTCCAGAAACCCTTCAGCATCCTGATGGGCAGAAGGCTATTTCCAGACCCCAG
Seq A exon
GTGAGAGGACAGAGTCCCCAGATGACAGCACCCACTCTGAGCTGTGGATTCCCTCCAGCTGCCCCAGTTGCTCAGCCACATGCAGGCACCTTCCTGTGCCCTGCACCAGCCCTTCTTTCCACATTGCCCCTTGTTTGTTTCTACACCAGATCCTGAGAGGTGGAGAGGAGACTCGTTCTTGTTCATTTCACTCCTGCCAACCTGTGTCCGTGGGGGCAGGACTGGGTTTACCTCTGGTCTCGCACATCAGCCCCCTCCAATGCCCTCTTCTTACTGATGCACTGAACACTTGCTGTGCTCTGCGCCATCAGGGAAGACTCTTGATATTTCTATCTTTAACATTTTTACCTTGCTCTATTTCTGAGAAGGACCTATGGCAGCTGTGTCTTTTCTCTTCAGGTCTTGGAGGTAACCATGTCTAGTTAATCATCTATTCAGCTGTTGAATGAATGAATCCCTCCACTAGTAACAGGCATTGCTGGTCCAGATTTAAGATTCTCTCTAGCTTTTCTGGTTGGAAGTGATGTCATAGAACTATCTTGAGTAGTAACTAAGCTACAGACCTTAAAACTTGTTTTTTCCCCTAAATTAGTGCTTTATTGTTATATAAAATCTGAAAAACAAAGAGAAAATGTCATATAAAGTGTCAAACAGCCATCACTCAGAATCACATAGCCAAATAGTCTATTTTCTTCCTATATTTTTTCTATGTACACATTTCTCATGCTATCTAAAAGCAGAGCCTTCCTATGAAACCTTTTGTAAGTCTCAGTGATGTGAAGGGAAGAAGCAGTTACCTCAGTACACATCTTGCTAACAATGCACAAAATGAATCGAGATGAAGCGCAGATGCTCAGAGATGCGGTTCAAAGCCACGTGAGATGCTGAGTGTAGATTCCGGTAAAGGAGCTTAGTGGGGCCAGTCTTGCTGCTTGGGATACAAGCTGCCTCTAAAATGGCTCCTACAAAACAAACGCTGAATGCTTTTTCACTTTCTAACTTTTTTGGTAAAACTGAAAGTCCTCTTTGGATTTTTTTGGTTGTTTGTTAGTGAAAATAGGTACTAATGTCAGTCTTTGGTAAAAGCAAAGTTGTATGATACAAACTTTCAAAAAGTGAAGGAGACCATCTATATGGGTGTATATATAGATGTGTATATGTTAGTTTTCGTTCCAATCCCAAAAAAAGGCAATGGTACTACCGCACAATTGCACTCATCTCACATGCCAGTAAAGAATGCTCAAAATTCTCCAAGCCAGGCTCTAGCAATATGTGAACCGTGAACTTCCTGATGTTCAAGCTGGTTTTAGAAAAGGCAGAGGAACCAGACATCAAATTGCCAACATCCACTAGATCATGGAAAAAGCAAAAGAGTTCCAGAAAACCATCTATTTCTGCTTTATTGACTATGCCAAAGCCTTTGACTGTGTGGATCACAATAAACTGTGGAAAATTCTGAAAGAGATGGGAATACCCGACCACCTGATCTGCCTCTTGAGAAATTTGTATGCAGGTCAGGAAGCAACAGTTAGAACTGGACATGGAACAACAGACTGGTTCCAAATAGGAAAAGGAGGATGTCAAGGCTGTATATTGTCACCCTGTTTATTTAACTTATATGCAGAGTACATCATGAGAAATGCTGGACTGGAAGAAACACAAGCTGGAATCAAGATTGCCAGGAGAAATATCAATAACCTCAGATATGCAGATGACACCACCCTTATGGCAGAAAGTGAAGAGGAACTCAAAAGCCTCTTGATGAAAGTGAAAGAGGAGAGTGAAAAAGTTGACTTAAAGCTCAACATTCAGAAAATGAAGATCATGGCATCTGGTCCCATCACTTCATGGGAAATAGATGGGGAGACAGTGGAAACCATGTCAGACTTTATTTTTTTGGGCTCCAAAATCACTGCAGATGGTGATTGCAGCCATGAAATTAAAAGACGCTTACTGCTTGTAAGGAAAGTTATGTCCAACCTAGATAGCATATTCAAAAGCAGAGACATTACTTTGCCAACAAAGGTCTGTCTAGTCAAGGCTATGGTTTTCCCTGTGGTCATGTATGGATGTGAGAGTTGGACTGTGAAGAAAGCTGAGCGCCGAAGAATTGGTGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCAACCAGTCCATTCTGAAGGAGATCAGCCCTGGGATTTCTTTGGAAGGAATGATGCTAAAGCTGAGACTCCAGTACTTTGGCCACCTCATGCGAAGAGCTGACTCATTGGAAAAGACTCTGATGCTGGGAGGGATTGGGGGCAGGAGGAGAAGGGGACGACAGAGGATGAGATGGCTGGATGGCATCACTGACTCGATGGCCGTGAGTCTGAGTGAACTCCGGGAGTTGGTGATGGACAGGGAAGCCTGGAGTGCTGCGATTCATGGGGTCGCAAAGAGTTGGACACGACTGAGCGACTGATCTGATCTGATCTGATCTGATGGGCTTCCCAGTGGTGCTAGTGCTAAAGAACGTGCCTGCCAATGCAGGAGACATAAAAAATGTGTATTTGATCACTGGGTTGGGAAGATCCCCAGGTTGGGAAGATGCCTGGAGGAGGGCATGGCAACTCACTCCAGTATTCTTGCCTAGAAAATTCAATGGACAGAGGAGCCTGGCAGGCTACAGTCCATAGGGTCGCAAAAATTCAGACATGACTGAAGGGACTTAGCCCACGTGCCTAAATGTGTATATATATATATATACACATACATGTGTTTTTAAATGGTTGAGAACATATGTAGATGAAGCTTCATTTTCTATTTTTAATACTATAAAATGAGATTTTCCATGTCATTCTTAAATATGATTTTTAGAATTGGTATGATAAATTCACATCATTGCTCATGCGTTTATTCATTCACAAATACGGAGATCCTGCAGTGTCCCTGGTCCTGTTATCGAGGGTGGGGATACGTAGGGAACTAGACAAAGCCTAATTTCATGGGGTTTCTGTTCAGTAGAGGCAACTGCAAATACAGCACTGTATGCTTGAGGGATGTTCCTTTAGACGGTGTGGGAGGGAGTGCGTCTCTGAGCTCAGCATGGATGGTGGACATGAGCCAGGTGAGTATTCAGGGAACAAGTGTTCAAGGCAGAGGGCATAGCAAGAGCAAAGACCCTGTAATAAGATGACCTGGTACAACTGAGGGAGAGTATGGGCTGTATCTAGAGAGTGGTGGTCCAGTGGTTAGGACTTTGCACTTTCATTATTGAGGGCTTGGGGTCAGTCCCTGGTTGGGGAACTAAGATCCTGCAAGCTGTTCAGTGTGGTCAAAAAAGTAAAAAAAGAAAAAAAAAAAGTTGAGAGGGCTAAGAAGCCAGACGAGAGAGACAGAGAAAGGCAGGATCATAGAGGGCCTGGTAGGCCCTGGAAGGAGCTCGGATTTTAATTCGTCTTTACTACTTTGTTAAACACTTCAAGTGTCTCTCTCTCCCTTTTCTTTTCTACTCTTTCTCCTTACTTCTCCCTTCCCTTCAATATGTAAAACACAGTGATGGACATTCTAATATATAAGCCCTTGTGTATTTCTTAAATTACTCAGTTAGGAGAGAAATTCCTAGAAGGAAAGTCAGACAGCTTGGGTTTGAATCCTTGCTCTGCCCTTAACTAGCTGTGTGACCTTATACAGCTTGCTTAACTTTGCTGTGTGTTAGTTTTCTCATTTGTTAAATGGGATGATAATAACAATACCTACTAACAAGATAGTTGTAAGGTTTAAATGACTCGCTGTATATAAAATGCTCAGAATACTACTTGGTACACAGTAAGTTCTATACTCATTAGAACAAAAAATGAAACTTTTTCTGTATTTGCCAAAGTGTTTTTTCTAAAGGTTATACCAATTATCTTTTTCTGAGAGTGCAAATTGTAAATACAACACAGAAGGACAAATACCGTATGATTCCACTTATACAAGGCGTCTAGTTTCTGGCAAACTCATAGAGACAGAAAGCGTAGAGGTTCTCAGGGGCCAGAGGGAAGAAGGAAAAATGGGGAGTTAGTGTTAATGGGAACAGAGTTTCTGTTGAGGTTAATGAAAATTTCTGAAAATGGAAAGCGGTGATGGTTATGCAACATCATGAATATTCTAATACACTGAACTGTACACTTTAAGAGGTTAAATGTGTAAATTTTATGAAATGTATTGGGTTGGCCAAAACATTCATTTGGATTTTTCCATAAGATGTTACAGACAAACCTGAGCAAACCTTTTGGGCAACCTGATATATTCTACCACACACACAATTAATACAAAGGGATGTGGGTGTATTTTACTCCCCCCCGTACAGTTGCTCACAGTTCATCTTGAGCAAGTCAGCTAGGAAGTGAGGTATGGGATAAGTTAGATTCAGTGGTTGTCACCTTCCCTGATCTTTGCATTTAGGGGTTCCCTGAAGGGTGTTTCCTGGCTCTCTTCGTCTCCAGTAGAAGCATTCCATACCCCTGCTCCCGGCCTTGGCATAGTTCTGGAAATCCCATGCTCTTGGGGACTAGTAGCACAGTGGCCAAAACCCTGTAGGATTAAGGATAATCTGAAGATGGAGACTGGGCTCTGCCCTTGTCCTGAGAAGTTCAGCAAGTTATTCCTCGTGGCTAAATCGTGGTTTCCCTTCAGTCATATTAGATCCTGTAAGGCTGCTGCTGCTGCTGCTGCTAAGTTGCATCAGTCGTGTCCGACTCTGTGCGACCCCATAGACGGCAGCTCACCAGGCCCCGCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGCATGGGTTGCCATTTCCTTCTCCAGTGCGTGAAAGTGAAAAGTGAAAGTGAAGTTGCTCAGTCGTGTCTGACTCTTAGTGACCCCATGGATTGCAGCCCACCAGGCTCCTCCGTCCATGTAAGGCTATCCCTGCTGATTTATCGAGTAGGTCAGGTGAGGGAGTATATGTAAATGTGCCTTTGTAACCTGTCAAGTGCTATAAAGATGTTACTTCTCTTTCGTCTAATTCCAG
Seq C2 exon
GTGCCACTGATTCCCAGAGCTCGAAGTATTTCTGAGAGTTCCATCGTATCAGTCAAGGAAGATGAGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000854:ENSBTAT00000001137:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development