BtaINT0130226 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000854 | SEC16B
Description
SEC16 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:30301]
Coordinates
chr16:60788050-60789026:-
Coord C1 exon
chr16:60788906-60789026
Coord A exon
chr16:60788159-60788905
Coord C2 exon
chr16:60788050-60788158
Length
747 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
CTCCTGTCATCTTGCTGCAGATC
3' ss Score
9.47
Exon sequences
Seq C1 exon
TGCCAAGGCAAGGGAGTCCTTATATCTGGCAGGAAGATCATCGAGATCAAAAGTACCTCAATGATCATCAACATGAAAACCAGAATAGTCCATTTGGAACAAATAGGGAGACCCAGTTCCA
Seq A exon
GTAAGTATGCAAGGAGAGGCTGGTTCTACAGACTACGTTTGGCAAACTTGATGTCATCTGGTACTGGTCCCTCATCTTTAGAAGCCCGTCTGCTTTTGTTCTGGCCACAAGGCTGGAGCTCAGGCTGGCCTGAGCCAGCTGTTCACATGGACCCTGGAAGGAGGGGTTCTTTATTCTGAGTGGCAGTTTCCCAAACCTGCCTAAGTCCCCAAACCTGTGAGGTTACTTGAGGTCCATCTTGAAGGAGGGCATTAATTCTGTGTTGGCCTTGGAACAGATGTGGCCTTGCATAAGTTCTTACAATTGCATCCTGCCTGGGGATGGGGTACTTCTCCTCTGCCCAGTCCTGTGCCCTAAGAACGGTCTCTCCCCTGGGATGAGAAGAGCAAGGAAGAGCATTTTGTACATGTACCTGTCTGGTACCCTTAGGCCTTTCCCCTGCCAGAAACTCACCAATCCGCCTGCTCTGATTTAAGTCATTCTGGGATGTCAGGCCACAGAGATCCAGCCTTCTCTGCAGAGTTTGGGGGCCACTTCTAGTAACTGTGCTATGAACCCCGGACGTTCCTGTTTTTCTGGTTTAATAGACTGTGGCAGCACAAGAGAGGACCAGGCTTTTCCCTGTGGCACATGGGCCAACCCGACACCTGCCCACACTTTGCGGCAGAGCAGCCTCCGGTACAGAGCAGCTCAGCCTGCTGGCCTGCCCTGGATCCCCTCTCACATGCTCCTGTCATCTTGCTGCAG
Seq C2 exon
ATCTAAGAGTCGGAATCCTTATAAAGACAGTCCTGCTTCTAACTCTGGACAGGAGAGGCCCGAGGACCTGTTCATGGAGAGTCCGCTAACTGGGGCACAGAAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000854:ENSBTAT00000001137:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.946
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAGGCAAGGGAGTCC
R:
TTTTCTGTGCCCCAGTTAGCG
Band lengths:
224-971
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development