BtaINT0130664 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020755 | SELP
Description
Bos taurus selectin P (granule membrane protein 140kDa, antigen CD62) (SELP), mRNA. [Source:RefSeq mRNA;Acc:NM_174183]
Coordinates
chr16:38055808-38057239:-
Coord C1 exon
chr16:38057027-38057239
Coord A exon
chr16:38055994-38057026
Coord C2 exon
chr16:38055808-38055993
Length
1033 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CATTCTTTTTTCTTCTGCAGCTG
3' ss Score
11.76
Exon sequences
Seq C1 exon
TGGACACAGTATCAGCTCCTGCTCCAGGGGTGCAATGCCCAACCCTCATCGCTCCGAAGCAGGGAACGATGTCCTGTCAGCACCATGTGAGGAACTTTGGTTTGAATACCACTTGCCACTTTGGATGCAAAGCTGGATTCACACTCCTGGGAGATAGTGCTCTCCAGTGCAGACCTTCCAGACAATGGACGGCAGCAGCTCCCACGTGCAGAG
Seq A exon
GTGAGGCGAAACAGCAGGCAGCGCCGATGCTGTCTCCTAGCATGCTAGGCATTGTCCATGCCTGTCGAAATCCTACCCAATGCCAGTGACCACTTCAAGGGTCAGCTCCTCCATGAAACCCACAGCAATCCCAATTAGAAGTAATGAGCAACAGGCATATCATGTTTCCCCTTCCTTACATCGCAAGCTAATGCCCTGGTACTCCTAAAGGAGGAAACACATGGAAATGACAAAATGTGTTAGAGCCACAAGCATGCTGAACATGAAACCAGCTATATGAATTGTGAGTTACAAGGTACAATTCTATTAATGATGTGGCCTTGTAAACATTGCATATTTCATAACTGGAACCCAATTAAAAAGATAAATTATGAATGTTACCTCTTGAAGACCTATACCCTATGCATGAAGCAGTGTGCCTCTTCCATCATTGTATTCCCTATGAAGCACAGAACAGTGTTTTGCAAATGTCAGTATTGCCCAACAATATTTGTTAAATTCAGTCTCCTGAGTTGAGTTAAATTTGAGTTAAATTTCGTTTTCTGTACACAAATCTGGGAGAATATCCTGAAATGCCCTGAAAAACAGTTTAAAGAGAATGGTGGTCTCTACTTCTTTCAAACTTTCAGAGGCCAGGTATGCTGAACAATTGTTATCTCAAGAAACATGTGCTGACATGGCAGTTAATTGCCAGTGGTAGTAATAATAATATTTAGGACAACAATATTTTTGAGAAGCAAAATTCTGTAAATAGTATTTTTGTGGGCAAGACTGATCAATCCACTGGAAGTTTATTTACTGAATCGCCACTTTCAGCCCTCCTTAGTTCTTCGGCTATCCTTCTTTGAGTGTATATCTCAGTACATTTGATGTTGGAAGAACTTGTGGGAATATCAAAAATAGCTCATGTCCTTTCTGATCTTTTGTATTCCACCACATCTACTGGCAACCCTAGCTATGTTTCATATGAAACCATAATCTTTTATGTGCTTTCTGTATGTTCGCTTTTCCTACATTCTTTTTTCTTCTGCAG
Seq C2 exon
CTGTCAAATGCGCCAAGCTACCTGTTACTGAGCCAATAGTGATGAACTGCTCCAACCCTTGGGGAAATTTCAGCTATGGATCAACCTGCAGCTTCCATTGCCCAGAGGGTCAATTACTTAATGGCTCAGAAAGAACAGTATGCCAAGAGAATGGTCAGTGGTCAACGACCATGCCAACCTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020755:ENSBTAT00000027661:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=81.9)
A:
NA
C2:
PF0008415=Sushi=WD(100=92.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCAGGGAACGATGTCCTG
R:
CTTGACAGGTTGGCATGGTCG
Band lengths:
344-1377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development