MmuINT0140965 @ mm9
Intron Retention
Gene
ENSMUSG00000026580 | Selp
Description
selectin, platelet [Source:MGI Symbol;Acc:MGI:98280]
Coordinates
chr1:166072805-166074210:+
Coord C1 exon
chr1:166072805-166073014
Coord A exon
chr1:166073015-166074024
Coord C2 exon
chr1:166074025-166074210
Length
1010 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TTCTTCATTCTCCCTCACAGCGG
3' ss Score
9.91
Exon sequences
Seq C1 exon
GCATAACATCACTTCCTGCCCCAGCAGTCCGATGCCCTGCCCTCACGACTCCTGGACAGGGCACAATGTCCTGCCAACACCACCTGGGAAGCTTTGGTCCGAACACCACTTGTTACTTTGGGTGCAAAACCGGATTTACACTCAGGGGAGCCAACTCGCTCCGCTGCAGGGCTTCAGGACAATGGACAGCAGTGACCCCCATGTGCAGAG
Seq A exon
GTAAGTAGGCAGGAACAGGAAATTCTGGAGCTATCTTCCTGCAGGTACTTGAGTTAGTCATTGTGTGTATCTGCCTGCTTAAATTCCACCTAGCCCTGACAACCACTGCAAGCACCCACTCCTCCCTCCCTGAAGTCCCCAGCAATCCCAAGCCAAAGTGGGCAGCAGCTGCTTCAACTTTGACCTTCCCCAACCCCCTGCCAAGTGCCCTGGTACTTATGTCTATATGTATCAGAGTTAAATGTGCACAAATGTAAAGCCAGCTCATTGAATTGTGAAGTACGAATTGTGGCATTACTAATTAGGTGACAGTTACGAGTCTGCAGCGTTTTCATCATGTTGGATCTAAGATGTTAGCCCTGAGTGACATTTCTTAAGGACCTACCCCACTATTCACAAAGCATGGAGCCCCTAACCTTCTTTGTCTTGATATCTTCCACACAGCACAGCAGTGGGCTTTACAGATGTCATAGCTGCTCTTTAACACTTAATTTGAATTAAATCAGATTTCCCAAGGCTCATTTGCTATTCACCATTTACAGAGAATACTCTGAAGTTATTTTTTTTTTAATGGTTTAAAGAGAATCGTGGCTTCTCCTTCTTCCAAACTTCTAGTGTCCAGCTGTGGGGAACGCTAAATAAGTATTTTGTCAATCACATGCTGGCATCGCTATTACTCACAACACATCAATAATAACACATAGATACATACAGATTCGATAGTGTTTGCGAAGGGCAAATTTTGTAAGGAGACTTTTTGGAAACAAGACGAGTGCATTGTTATGTGATTCCATGGGCCATCCTTGTTCTCAGGCTAGTATTATTCCAGTGGAGGCTTCAGCAAGGTGTTATTTTAGGAGCTGCTGTGTGTGACTCTTGGGTATGACTGACCTCCATCGTGACATTTTGCATCCAGTCCATCGATTGACAATTCCAGTCGGGTTCAAAGCAAACCACAATGCTCCCTTCAGCACACCTGCTTCTCACACATTCTTCATTCTCCCTCACAG
Seq C2 exon
CGGTCAAATGCTCCGAATTGCACATGGACACAGCAGTAGCAATGAACTGTTCCAATCCCTGGGGAAACTTTAGCTATGGATCAACCTGCACCTTCCAGTGCCCAGAGGGGCAGTCACTGAACGGCTCTGTGAGAGCAACCTGCCGAGAGGACGGTCACTGGTCAGATGCCATGCCAACCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026580-Selp:NM_011347:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=81.7)
A:
NA
C2:
PF0008415=Sushi=WD(100=92.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACATCACTTCCTGCCCCAG
R:
CTCTCACAGAGCCGTTCAGTG
Band lengths:
342-1352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: