GgaINT0038544 @ galGal3
Intron Retention
Description
NA
Coordinates
chr8:3736129-3736553:+
Coord C1 exon
chr8:3736129-3736314
Coord A exon
chr8:3736315-3736433
Coord C2 exon
chr8:3736434-3736553
Length
119 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TGTTTGTGGGTCTCTTTCAGAGG
3' ss Score
8.51
Exon sequences
Seq C1 exon
CCGTCAGCTGTCCAGTGCTGGATGTCCCCAGCCACAGCCACCTCAGCTGCTCTAATCTGCACGGGAACTTCACGTTCAACTCCACTTGCACCTTTTCCTGCAAGGAAGGATTTATCCGGGTGGGAGCGGAGATGCTCAGGTGTGCAGCCACGGGGAACTGGACCAGACATCCCCCAGTCTGTGAAG
Seq A exon
GTATGGTGGGGCTGTGCTTCCCAGCCTCCTACAGTATATCTCGAGGATGGAGGAGGCACCCAGCAGCTCTGTCTCTGTGGAATCCCTCTGATAACAAGCTGTTTGTGGGTCTCTTTCAG
Seq C2 exon
AGGATTCTGCCTTTTTGAAACAAGTTCTGGTTTACACCAGCACCAGTGCTCTGGCAGCAGCCGGCCTTGTGCTCTCTGGAACGCTCATTGTCTTGCTTGTCAAGCAGCTCAGCAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002643:ENSGALT00000004163:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCACCTCAGCTGCTCTAAT
R:
ACAATGAGCGTTCCAGAGAGC
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]