RnoINT0132779 @ rn6
Intron Retention
Gene
ENSRNOG00000002794 | Selp
Description
selectin P [Source:RGD Symbol;Acc:3656]
Coordinates
chr13:82457530-82458936:+
Coord C1 exon
chr13:82457530-82457739
Coord A exon
chr13:82457740-82458750
Coord C2 exon
chr13:82458751-82458936
Length
1011 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TCTTCATTCTCCCCTCACAGCCG
3' ss Score
10.16
Exon sequences
Seq C1 exon
GTGTAACATCACTTCCTGTCCCATCGGTTCGATGCCCCGCCCTCACTACTCCTGGACAGGGCACAATGTCCTGTCGACACCACCTGGAAAGCTTTGGTCCGAACACCACTTGTTACTTTGGGTGCAAAACTGGATTTACACTCAGAGGAGCCAACTCTCTCCGCTGCGGGGCTTCAGGACAATGGACAGCAGTGACGCCCGTGTGCAGAG
Seq A exon
GTAAGTAGGAGGGGCGGGGGACTCTGGGTGAGTAGGAGGGGCGGGGGACTCTGGAGGCTTTCCTTGAGTTAGTGATGGTGCCTGTTTAAATTCCGCCCAGCCCTGACAACCACTGCAAACACCCACCCATCTCTGAAATCCACAGCAATCCCAAGTCAAAGCAACGTGCAGCAGCTGCTTCAACATTGCCCTTCCCCCAACCCCTGCCAAGTGCCCTGGTACTGATGTCTCCATATATTAGAGCTGAAAGTGTGCAAATGTAAAACCAGCTCAATGAACCGCGAAGTATAAATTGCAACGTTATTAATTAGGTGGCAGTATAATCCTTCAGTGTTTTCGTCATGACCAGACCTAAGATGTATGTCCTGAGTGGCATTTCTTAAGGACCTACCACGCCATTCACAAAGCATGGGGTCCCCAATCTCCTTTGTCTTGCTATCTCCCACCAAGCATGGCGTTGGGCTTTACAAATGTCATGACTGCTCTATTACATTTAATTTGAATTAAATCAGATTTCTTAAGGTTTATTTGCTAGTCACAATTTACAGAGAATAATCAACGTATCTCTTGAAAGAATGGCTTAAAGAGAATCGTGGTGTCTCCTTCCAAACTTCTGGTGTCCAGCTGTGCGGAATGCTAAATAAGTATTTAATTAGTCACACGCTAGCATAGCCGGTTACTTGATAGTAACACATAGAAACAGATTCAGTGGCGTTTCTGAAGGGCAAATTTTGTAAAGAGACTGTTTGGAGGCAAGACCAGTGCATTTGCAGGTATTTATTATATGACACCACAGGTCATCCTTGTTCTCTGGCTAGTATTATTTCAGTGGATGCTTTGGAGAGGTGCTATTTTAAGAGCTGCTGTGCATGACTCGTGGTTATGGCTGACCTCCATCATGACACTTCTCATCTACTCCATCGATTGACAATTCCAGTCGAGTTCAAAGCAAGCCACAATCCTCCCTTCATCACATCGGTTTTTCAGGCATTCTTCATTCTCCCCTCACAG
Seq C2 exon
CCGTCAAATGCTCAGAATTGCACATGGACACAGCAGTCGCGATGAACTGTTCCAACCCCTGGGGAAACTTTAGCTACGGATCAACCTGTGCCTTCCACTGTCCAGAGGGGCAGTCACTGAATGGCTCTGCCAGGACAACCTGCCGAGAGGACGGTCACTGGTCAGATGCCATGCCAACCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002794:ENSRNOT00000003759:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=81.7)
A:
NA
C2:
PF0008415=Sushi=WD(100=92.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTCACTACTCCTGGACAG
R:
CATGGCATCTGACCAGTGACC
Band lengths:
345-1356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]