BtaINT0131695 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024822 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:HGNC:445]
Coordinates
chr11:102384673-102385879:-
Coord C1 exon
chr11:102385787-102385879
Coord A exon
chr11:102384838-102385786
Coord C2 exon
chr11:102384673-102384837
Length
949 bp
Sequences
Splice sites
5' ss Seq
TGAGTATGT
5' ss Score
4.43
3' ss Seq
TTTTTTTTCATCTTATTTAGCTC
3' ss Score
8.95
Exon sequences
Seq C1 exon
AGGGACAGAGACCAGTCGGTGTTCATCTGACTGGCCATTTCAACCCTACCTCGTGTTTGATGTTGGAGATGGCTTAGAAAGACGGGATAATGA
Seq A exon
GTATGTTCTCTTATACTTCAGTCTTCACTGATGGTGTCAGAATTTTTATATTGTTTTTGTTTATATTTAAGTTCAAAATACTTTTCATACAAATCTCTCTGCCTAGTGCCAGGGCACAATCATTTTCTTTTAGCTGGATTGATAAATTCATCTTTTTAATCATAAAATTACTGATATCTTTATGTATTTCAGTCTTTCAGTTTTTCTTTCTTAATTGTATTAGTCGGGATTATATTACCTAACATGTGATAAGCACTTAAGTAGATCCATGCTGAACTCACTGCTGTTGCTGCTAAGTCAGTTGTGAGTAAAATAGACGTGGCCCCAGTGCAAGGCTATTGTGGTCTAACACGAGGCAGACATTAACCAGGCCATTACTGTGGTGATTGATTATTCCAGTTGGGTAAAATATTGGGAAGGAGAAATACAAACACAGTTGAATTAAGGTGTGAGGCAGAGGGTGGACGATACTTTGAGCATGTTGGATTGTGTGAATCGATCGGGTGGTCTGTGAATGCTAGTGCATGATCCACTTGGCCTGTGGTGGGGAATGAGAAAAGTGATACATCTGAAGCTCTTTTCTCAGTGTTGGGAAGATAATAAATCTGTAATAGGAGCTCTTCATTAGTCATGTCTTCATTATTATAAATACCTTTGTTCTCACTGTGGCTATCCCTGTTTTAACAAATGAAGAAGCTGGTGTCTAAACTTATTTGACTCCAAGCTCTTTTCTGTCATACAGCTTCATGTTTCACTGGGCAGTTATTCTGTTTATTCATATGTACAGTGTTAATAATGGTCATTATAACAGCCTCTTTGAATCACTTCTGACTGAATAAAGATAAAGCCTCCCAATCTACCCTTTACTGTAATAGAAACAAAGTGGAACTTAACAATTGGACTGCTATTAGTTTTGATGTCTTGTATTTTTTTTTTTCATCTTATTTAG
Seq C2 exon
CTCATATGTAAATGTTCAAGAGATAAAACTGGTAATGGAACTAATTAAACTTATTAAAGACAAACGAAGGGACGTTACTTTCCGAAACATTGGCATAATAACCCATTACAAGGCTCAGAAGACAATGATTCAGAAGGATTTGGACAAAGAGTTTGATAGAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024822:ENSBTAT00000042924:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF130871=AAA_12=FE(15.3=100)
A:
NA
C2:
PF130871=AAA_12=FE(27.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGACAGAGACCAGTCGG
R:
CCTTTTCTATCAAACTCTTTGTCCA
Band lengths:
258-1207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development