BtaINT0131696 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024822 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:HGNC:445]
Coordinates
chr11:102381625-102384837:-
Coord C1 exon
chr11:102384673-102384837
Coord A exon
chr11:102381724-102384672
Coord C2 exon
chr11:102381625-102381723
Length
2949 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
AATATGTTTCTCTTTAATAGGGC
3' ss Score
9.14
Exon sequences
Seq C1 exon
CTCATATGTAAATGTTCAAGAGATAAAACTGGTAATGGAACTAATTAAACTTATTAAAGACAAACGAAGGGACGTTACTTTCCGAAACATTGGCATAATAACCCATTACAAGGCTCAGAAGACAATGATTCAGAAGGATTTGGACAAAGAGTTTGATAGAAAAGG
Seq A exon
GTGAGGCATCTGTATTTTTATGGCTCTTTCCAGTTTCTCTGTTGAATTAAAAAGAAGAAAGAGGGGATGGAAGGAGAGAAGAAAATGAAACTTAACCCCCGGGGCAGGGTCATAGACCCTGGTAACATAGAACAAGGAGACCAGGACACTGGCTCCACAGACTTGTGCTGAGAAGGGAGTGAGGTTACACTTGTAGCACCTGTAGACGGAGTGCCTGCTGCCTTTTCGAAGGTCTTCACCATTACACTTGACAGTGGAATTGACTGAGAAACTCTCCAGACCTTTCCATTTAGTTGGATGACTTGTTAATCTAAATTCTAATTGTAGCAAGATATACATAGTCACATTTTCACTTAGAAAAAATTATTTAAACCTTTTAGTGCCTTCATGTATAGGGTGAAGATCGTGTCTTTGTCTCCTTTTACCTCAACAGTAAAATTAAAAATTAAATATTGGAAATCCAGTAACTCCGTTCTGCACCTCGAAACACACAAACTACCAAAATTGACACTAGGGAAAAACCAGAAACATTGGATAGATCTATTAAATGTAAACAGATTGAGTTAGTAATCAAACACTTACCAACAGAGAACAAAGCCAGGACCAGGCTTCTCTGGTAAATTTATCCAACATTAAGATTTAACACCAGTCTTTTTGCAAATGCTTTCGAAAAATAGAAGGGAAGACTACTCATTTTATGGGGCCACTATTATCTTGATACCAGAGCCATGGAGACATCACCAGAAAACAGAACTACAGACTAATATATCCTTTATGAATGTGGATGCAAAAATTCTCAACAAAATAATGGCAGCTGAACGCAGTAGCATATTAAAAAGATTATAGACCAGGATCAAGTGGAATTTATCTCAGGAATGCAAGGTTGGTTCAATATATGATAGTCAGTCAGTGTTCTGTACCATAATTAAAGGGAAACCCCACGTGGCTGTGATCATCTGAATAGATTTCATTTATTTGAGTGAAAGCATTTTAGTGCAACAACAACCTTTCATGATAAAAATACTCAACAAATTTAGGAATAGAGGGGAACTTCCTTAGGCTAATAAAAGACATCTATGAAAAACCCATAGCTCAAAAACCATACTTGATGGTAAGGTGAAAACTTTCCCTATATGATAGGAAGGATAGGATGTCTGCTCTCACTGCTTTTGTGCAGCATTGTATTAGAAATTCTGTGCAGAGCAGTTAAGTAAGAAAAGGAAATGCAATATTTGTGCAAACTGCTAGTCCTTATAAACAAGTTCAGCAGAGTTGTAGGATACAAGATCAGTATGCAGAAATCAGTTGTATTCAGCAGCCACGAGAAATCTGAAAAAAATTTTTTTAAATTCCATTTACGGTAGCATCATAAAGAACAAAATACTTAGGAATAAATATAACCAAAGAAATAAAAGCTCCTACACTAAGTACAAAAAGTTGTTGAAAGACATTGAAGAACTCCAAAATAAGTGGAGATAGTCCATGTTCATGGATTGGAAGACTTACTAAGATGGCACCTTTCCCCACGCTGATCTACAGGTTCGTTATCTCCATCAAAATTAAAACTACAGTTTTGGAAAAGCTTACTGCAAAGTTCATGTGGAAGTGTAAGGTACTCTCCAAACAACTTGACAGAACAGTGTTCGGGGGCTCACACTTTTTCAAAATTTACTACAAAACTGTCAACATTGTGGTACTGTCATCCGGGTAGACATATAGACTAATAGAAGTGAGATTCCAGAAATAAATCCTTACGTTTGTGCCCAGTTGATTTTTCAAGAAGGGTGCCAAGACCATTCAGTGCAGAAAGAACAGTTTTTTCAACAAATGGTGCTGGAATTAGTATAAGGTATCCTCCTGCACAGAGTGAATATTGCCCCGTGTCACACTGTATATAGTAATTAACTCGAATTAGAGCCCTGAGTCTTCAGAGACAAAATTATAAAATGTGTAAGGAAACAAAAGTAAATTCATATGATCTCAGATTAGGCAACAGTCTTGGGTGTGATATCCAAGCACAAGTAACCAGAGGAAAATTAAATTGGTCTTCATAAAAATGAAAAGCCTTTGTTTCAGACAACACTATCAAAGAGTGAAAAGACAACCCACAGAATGGGAGAAAGTACTTGCAAATTATTCATCTGATGAGTTATATCCAGAATATAAAGAACTCATACAACTTGATAATAAAATGACAGTCTTATTTTGTTGAAAAATGTGAATAGCATTTTTCAAAAAATAAAAATCCAACAGGCACACTGAAAGGTATTCCACATCATATATCATTAGGGAAATGCAAATCAGAACTACAATTAGATAACCAAACCATTTCATATCCACCACGATGACAGTCATTGAAAAAACAGGCATTAACAAATTTTGGCAAGGATGTGGAGAAATTGAAACAATACATTGCTGGTGAGAAGACAGAATGGTAAACCATTGTGGAAAAGTTTGGCAGTTCCTCATAAAACTTAGTTACCACATGACCAGCAGTTTCATTCCTGGATACATACCTGCTTTGGGGAAATGTTCACAGGAAAGTTTGTACAGGAATGTTCATAGCAACATTATTCATGATAGTTAGAAAGCAAAGACAACGCAAACTTCGAAAAATTGTATATGGATAAATTGTGTATTTGTACAAGCAACCATGCAGTTGTAGAAGGAATGAAGTAGTGGGATATTTTGTGACACATGTGAACCTTGGAAAACATTGTGCTAAGTGAAAGAAACCTGACACAGAAGGTCACATGCTCTGTAACTTCATTTACATGCGAGCTATGTCCCATGTAGAAAAGTCCATAAAGATAGAACATAGATGAGTGGTTGCCAGGGCCTGGCGGGGAGGAAATTAAGAGACTGATGGCTAATGGGCACAGGGCTTCTCCACTGGGAATAGACATGCTTTAATAACTGTTTTTCAGTAAATATGTTTCTCTTTAATAG
Seq C2 exon
GGCAGCAGAAGTCGATACCGTGGATGCCTTCCAGGGGCGTCAGAAAGACTGTGTTATTGTTACATGCGTCAGAGCAAATGCCACACAAGGCTCAATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024822:ENSBTAT00000042924:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF130871=AAA_12=FE(27.2=100)
A:
NA
C2:
PF130871=AAA_12=FE(16.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development