BtaINT0131728 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006569 | SEZ6L
Description
seizure related 6 homolog (mouse)-like [Source:HGNC Symbol;Acc:HGNC:10763]
Coordinates
chr17:68310619-68313621:+
Coord C1 exon
chr17:68310619-68310651
Coord A exon
chr17:68310652-68313506
Coord C2 exon
chr17:68313507-68313621
Length
2855 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CTCACCGGCTGTGTGTTCAGTAG
3' ss Score
4.7
Exon sequences
Seq C1 exon
TTAATCAAGACAGCTTTGAACACGCCTTAGAAG
Seq A exon
GTGAGTCCCACGAAGAAAAACACCTCATTAGCCAAGCTAAGAGCAGAAAGCAAGGGAAGGCCCTTGGAAATCCTTATCCAGATGCTTAAAAAAAAAAAAGCAAAAATTCTGCCTTCACATTGCTGAAGCTAATTTGAAAACAAATGATATTGTAAAGAAAAAAAAAATTGCATTTGCAATTTATGGTCCTAACCATGACCCGAAAGAGATCAGACGCCAGTTCTGTTCATGATGCCAAGCGGAAAACATCTGGGGATCCACATGCCTGAGAAAGACACGCTCCTCTTGTCAAACTTTTCAACCATGTGGTGCTATTTGAGGAACTAAATCCAGGAACGCCTCACCTTTCATGCTGAGCAGACTCCTGGTTTCAGGAGGGAAACCTCTTCCCTAGGGGATGCTCTGCGACCTGGTTTTCCCTCCATCTTTTGCTTCCCCCAAATACAGCTATACCTGGGCAACCCCACCCCACCTCACCCCCGCCCCTTGTTTTTGTGTGTGTATGTTTCTGATTTTTGGCTGTGCTGAGTCTTTGTTGCTGCACGTGGGCTCTTTTTAGTTGCCGTGAGTGGAGGCTGCTCTCTGGTTGCGGGCACAGGCTTCTCACCCTGGTAGCTTCTCTTGCTGCGGGGCACAGGCTCTAGGGAGTGCAGGCTCAGTCTTACAGTCGTGGCACACGAGCTTTGTTGCCCCACGGCACCTGAGATCTTCCCAAACCCAAGATCGAACCCTGGCCCCTGCACTGGCAGGCAGATTCTTAACCAAGGGACTGCCGGGAAAGTCCCTGTTTTCTATTCTTTTGTTAGAAATTACCAAGCGAGACTTATTAATGGGGAACAGATGTTAAAAGTGATACAGGATTTTGTCTTCCCTTTTCAACCCCTCTCATACATAAAATGTTCTGTTCTGTATAACCTTTATCTAGTTTGGTCCAAAACCACTCAAGTCAGAAAATAATAATAATATTTTGTTTAAAAAAAAGAAAAAGTTTTAGGGCTTCCCTGGTGGCTCTGTGGTAAAGAATCCACCTGCCAGTGCAGGAGACACAGGTTCAATTCCTGATCCAGGAAGATCCCACGTGCTACGGAGCAACCAAGCCTGTGCACCAGGACTACTGAAGATGGTGCTCCCTAAGCCCGTGCTCCACAGCAGGAGAAGCCACAGCAATGAGAAACCCACTCGCCGCAACTAGAGAAAAGTCTGTGCAGCAGCGAAGACCCAGCACAGCCAAAACAAATTAACTATCTTTTAAGTTTAACCAACTGGATGATTTCTAAATTATTTTTGGAGCCGCTTGTCTTTCTGACTATACGCAGTTCACTTAGAATCTGGGGCGGTAGGAATTACATGTCATGAGTTGCACTCTCTTGCAACAGATGACATTTTAATCCGAGCAGATGGAACTGGGGCTCAAGTGTGTACAGGAACAGAGCCTGTATTAGCCAGTCCGCTGGAAAAACAGGGCATTTATGCTCAACTCAGGCCCTTCCTTTGCTGTCTTCCAAGAACCAGTGAACCGTGAGAACGTCTCAAACGCCTGGGGGCATGATGTTCAGAGGGCATGATGCCATTGTGATGTTCTGTGCTCACGCATTTATCATAGGTATTAAAATTGATTTTTCAGGCCCAAACAGTGGCAGTTAATGGATTATAGATTGGCATGCAGCCGAGCTCTGTTAGACGTGGCCACAGAGAATGGCAGAGAAAAACGGAGGTCAAGTGTCCAAAAGGGATGCGGGGCTTTGCTGGGAAAACACCCCCATCCCCCCTTCACCTCCACACTGAATTATCATTTTGTTGTTCAGTCACTCAGTCGTGTCCAACTCTTCGCGCCCCATGGACTGTAGCACGCCAGGGTCCCCTTCCTTCACTATCTCCCAGAGTTTGCTCAAACTCCTGTCGTGGAGTCGATGATGCCGTCCAGCCATCTCGTCCTCCGTCAGTTCTGATAGTTCCTGTGATTTCTGCAGATTACTGGGAGATAGTGGGGGGCTCCAGGTGAGGCCGAGAGGGTTACCCGGGAGTGTGCAGCCGCGGCCTCTGAGAATCAAACCCGAGTTGGCACAGTTGGGGTGTCATGGGGCGTGTGGGTACCGCGCACTGACCTGACTGCCCAGCGCCCTCTGCTGGTGGGTCTGATTAAGCAGGTCTGGAGGGGACCTGCCATTCTAGACACAACCCTGTCTTCTCTTGAAGTCGAGCAAACCTGCCTTTCCAGTTAGCACGTTGCGAGTTTTCTCCAAGGCTTCCCTTGGATTCGGTTTTAACCAGATTGTAACTGTTAATCACCTCACCCCTCCCTAGAAGAAACGAATTGAAAGTGAAAGTCGCTGAGTCGTGTCGGACTGTGCAACCCCGTGGACTGTATAGTCCATGGAACTCTCCAGGCAAGAATACTGGAGTGGATGGCCTTTCCCTTCTCCAGGGGATCTTCCCAACCCAGGGACCAAACCCAGGTCTCCCACATTGCAGGCAGATTCTTTACCAGCTGAGCCATAAGGGAAGCCCAAGAATACTGGAGTGGGTAGCCTATCCCTTCTCCACGGGATCTTCCTGACCCAGGAATCGAACATGGGTCTGCTGTATTCCAGGCGGATTCTTTACCAACTGAGCCGAGTTAAAAGCGTGTAATTCTCCATGGTGTCCATGACCACCCCATCCAGGGTTGAGTCTGGGCTCTGTTGCAAAGGACCAGCCCCGTTTCCTCCAGTCTCCGCCTCTTCTCCCTTCTGGAGACAGCTCTCCAAGGAGGAAGGCTTTCACCCACTCCGGCATTAGCTCCTGGAGTAGGTGCAGGGCTGGGAGGGCGGGGCCCCGCGCTGGGCGCCGGGTACCCTCACCGGCTGTGTGTTCAG
Seq C2 exon
TAGCAGAAGCGGCAGCAGAGACATCTCTGGAAGGAGGAAACATGGCTCTGGCTATCTTCATCCCTGTCCTCATCATCTCCTTACTGCTGGGAGGAGCCTACATTTACATCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006569:ENSBTAT00000008629:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development