GgaINT0006828 @ galGal4
Intron Retention
Gene
ENSGALG00000005577 | SEZ6L
Description
seizure related 6 homolog (mouse)-like [Source:HGNC Symbol;Acc:HGNC:10763]
Coordinates
chr15:7132857-7133293:+
Coord C1 exon
chr15:7132857-7132889
Coord A exon
chr15:7132890-7133178
Coord C2 exon
chr15:7133179-7133293
Length
289 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
AAGAGATCATGTCCTTTTAGTAG
3' ss Score
1.13
Exon sequences
Seq C1 exon
TCAATCAGGACAGCTTTGAGCACGCTTTGGAAG
Seq A exon
GTGAGTGACACATTTGCTGGATGAGCCCCTTGCACAACTCCCTGGGGCCAAGCCCCACCTCATTACCACCTCTGCGCTATAGCCTGGCACCCCCAGGTGTTCCCCAGCCCAAAGCCCAAAGCACTGCAGAGACACTGGGGCTGAGGCAGGTGCATGCTGCGGGGAGCCAATAGAACCTGCCCAGTGCTCCCAGTGCCCCCAGTCCCATGTGAGGGACTGGAGGGGTGGAGGCAGAGGGGCAGCAGGAGGCGCTGGGAAAAAGCCAGCGTAAGAGATCATGTCCTTTTAG
Seq C2 exon
TAGCAGAAGCTGCTGCAGAGACATCGTTGGAGGGGGGAAATATGGCCTTGGCCATCTTCATCCCAGTGCTGATCATCTCCTTGCTGCTGGGAGGAGCCTACATCTACATCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005577:ENSGALT00000008952:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATCAGGACAGCTTTGAGC
R:
CTGGTGATGTAGATGTAGGCTCC
Band lengths:
148-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]