GgaINT0006828 @ galGal3
Intron Retention
Gene
ENSGALG00000005577 | SEZ6L
Description
NA
Coordinates
chr15:7353782-7354218:+
Coord C1 exon
chr15:7353782-7353814
Coord A exon
chr15:7353815-7354103
Coord C2 exon
chr15:7354104-7354218
Length
289 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
AAGAGATCATGTCCTTTTAGTAG
3' ss Score
1.13
Exon sequences
Seq C1 exon
TCAATCAGGACAGCTTTGAGCACGCTTTGGAAG
Seq A exon
GTGAGTGACACATTTGCTGGATGAGCCCCTTGCACAACTCCCTGGGGCCAAGCCCCACCTCATTACCACCTCTGCGCTATAGCCTGGCACCCCCAGGTGTTCCCCAGCCCAAAGCCCAAAGCACTGCAGAGACACTGGGGCTGAGGCAGGTGCATGCTGCGGGGAGCCAATAGAACCTGCCCAGTGCTCCCAGTGCCCCCAGTCCCATGTGAGGGACTGGAGGGGTGGAGGCAGAGGGGCAGCAGGAGGCGCTGGGAAAAAGCCAGCGTAAGAGATCATGTCCTTTTAG
Seq C2 exon
TAGCAGAAGCTGCTGCAGAGACATCGTTGGAGGGGGGAAATATGGCCTTGGCCATCTTCATCCCAGTGCTGATCATCTCCTTGCTGCTGGGAGGAGCCTACATCTACATCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005577:ENSGALT00000008952:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATCAGGACAGCTTTGAGC
R:
CTGGTGATGTAGATGTAGGCTCC
Band lengths:
148-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]