HsaINT0148456 @ hg19
Intron Retention
Gene
ENSG00000100095 | SEZ6L
Description
seizure related 6 homolog (mouse)-like [Source:HGNC Symbol;Acc:10763]
Coordinates
chr22:26769417-26771655:+
Coord C1 exon
chr22:26769417-26769449
Coord A exon
chr22:26769450-26771540
Coord C2 exon
chr22:26771541-26771655
Length
2091 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TCACTGGCTCCTGTGTTCAGTAG
3' ss Score
5.37
Exon sequences
Seq C1 exon
TTAATCAAGACAGTTTTGAACATGCTTTAGAAG
Seq A exon
GTGAGTTCCAGAACGAAAAAAAAAAAAGTTCAATAAATCAAACTAATAGCACAAAACAAGGGCAGGTCTTTGAATATCTTTATTTAGACACTTAAAAAATAAATAAATTCTACCTTCAGACTGCCAAAGATAATCTTAAAATAATATTGTAGGGGAAAAAAAATTATGGGATTTGCAAGTCAGGACCCTAACAATAACCTGAAAGGGATTTGACAGCTGTTCTGTACATGGTAACAGCAATGAGATAAGGAAAGCTCAGAGCCCATAAGCCTGAGAAAGGCATAACCCTATTGTAAAACTTTTCATGATGCCATTCTAGAAGGGGAACTAAATCTAGTGACATGTCACCTTCCATGCTGAGAGTCCTCCTGGTTTCCAGAGGGAAGAGTTTGCCCTGGAAGCATTCAATGGTCCATTTTTCCCTGAGTCTTTTTTCCCCTCAGCATACCCACCCCTTCTCCCATCTCTCCTTACTTCAGCTCTCCTTTTATTAGAAATTCCCAAATGAGACTTATTAATGAGGAGCAGATGTTAAAATCTATCCAGGATTTTATTTCAGTTTTGTTTTCATTTTGTGGTTCCTTCCCTTTCCAACCCCTCCCGTGTGTAAAATGTCCAGCGTTCTATGTCACCGCTATTGAATTTGGTACAAAACCACTCACCGGGACTGTGATGTAAAATATATACTGTAATATATTACTGCATGTATATATATGTAAATACAAATGCAGTATATTATAGCATATATATTTAAAAATATATACTGTAATATATTGTTTCTTTTTTTTTTTTAATGTTTTTACCAAATCAAGCAGTTTTTATTATTCCTGGAGCCATCTTTAGCTTTCTGACAATAATGAGTTCACTTAGAATCTGGGGCTATGTAAATTACATTTCACTAGTGGCTGTTCCTTGTAACAGACAACACTTGAATCCAAGCAGGTGGAACTAGGGCTCATATATAAATGAAGGAGCATGAATTATACACTCCACTTGGAAAACAGAGGGCACTTCGTGTTAGTCTCCATTCAGAGTATCCTTTTTCTGCCTTTTGCCAACCAGTGAACCATGAGAACGTCTCAAAGGGCTGGGGTTGCTCGGAGCTTATGAGAGCCATTGTAACGTTTTGTGCTCATGCATTTATTCTGGGTATTAGGATTGATTTTTCAGACCCCATAAAGTGGTGGTTAATGGGTTATAGATTGGTGTACAGCCAAGCTCTATTAGATGTGACCGTGGAGAATGGCAGAGGAAACCTGGAGGCCAAGTTTCTAGAAGGAATGTAGGATCCCCCTTTAAGCTATGCTGGGAAAGCAGCCCTCTGCCCCAGGCGCCTGCAGCAGCTGTTATAGTTCTTGCAATTGCCACAGTGGGAGGTTGAGAGAGCAGCCGGGAAATGTGCAGGAGTAGCCTCTGGGAATCAAAACGGGCCTTCATATTTGGGGTGTCATTGGGGTGTGCAGGACAGAGAGCTGTCAGTCCCCAATGCTCAGAGCCCACTCGTGGACTGGAGAGTAGAACTCAAAAGGTCTAGGACGGGCCCGTCAGTCTGCATGCAACAAGCTCACCAGTCCACAGGTGAGCACCAGGTCTGAGAATCCCTTAGAAACCTTGCGGCTGACCACCAGCACCGTTCAACTCAACGACATACACAAACCCAGATTCGCCCACCACTCCTGCATCTGGGGTCCAGACCCATTCCTGTTTCTCTTCTCCACTCCATGGAATGTCCAGCAAATCTGCTTTCCCAGTTACTGAATTTGGGATTTTCTCCAAGTCTTCCTGTGAATTGGACTTTAATCAGATTTTAACTGTAGCTCCCAAAAAATGGGAATGGTACGATCAGGTTTCAAACAGTGTAATTCTCTATAGCTCCTATGGCCAACCCACCAAAGGATGAGTCTGGGACCCCTTGCAAAGGACCACCACCATTTCCTCTAGTCTTTGGAGATGGCTCTGCAAGGTCTAAGGCCCTCCCAGAGCCTTAGACCTTGGAAAGCCGTCTCCAAAGGGGTGGAGAACTGGGCAGTTGGGCACTCACTGGGAGTCAGCTACCTGGGAAATGAGGACCTCACTGGCTCCTGTGTTCAG
Seq C2 exon
TAGCAGAAGCGGCAGCAGAGACGTCGCTGGAAGGGGGGAACATGGCCCTGGCTATCTTCATCCCGGTCCTCATCATCTCCTTACTGCTGGGAGGAGCCTACATTTACATCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100095-SEZ6L:NM_021115:14
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)