BtaINT0132585 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010626 | SH3GLB2
Description
Bos taurus SH3-domain GRB2-like endophilin B2 (SH3GLB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001076802]
Coordinates
chr11:99509108-99509758:-
Coord C1 exon
chr11:99509735-99509758
Coord A exon
chr11:99509198-99509734
Coord C2 exon
chr11:99509108-99509197
Length
537 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TCATCCCCGGCCCTTCCTAGGCT
3' ss Score
6.3
Exon sequences
Seq C1 exon
CTCTGGAATGATGAGGTGGACAAG
Seq A exon
GTGAGTTGGGGCTCAGGGAAGAAACGGGGTGGGGAACGGGAGTCCAGGCTCGCCTGCTGTCATCGGGGGCAGGTCTGCGTCTAGTGCTGAGCTCTGCCCTGCAGCCTCTGGGGCCATGATAAGGGGCGGCCACCTCCCTCTCCCCCGCAGCACACCGTGGGCCCTCCAGAGGCCAAAGCAACTGTTGGTTGAATTTGTCCCTGCTGGGTGGTGGCCTCAGATGGACAAATGCATGAGCGTGAAAGGCCAAGGAAGGCGCCTGAGGCTCTGTGTGCCCACCCAGCAACTGGCCTCCAATGGGGGGTTCCCAAGCTGGGCTAAGACTTCTCCAGGGGGTCAGGGCCCCAGGCCTGAAGTCAGGGGTGAGAGGTGAACCCCTTCGCCGATGTCTGCATCCTGGGGTGGGGTGTGGGGAAGTCCATCTGCCACAGAAGGGAAGAGGAGACCGCTCCCGGGCGGCTCCAGGGGCGGGAGGAGTCTGGTAGGAGGGCGACTAGGGCCATTCTTGCCCTCGTGCTCATCCCCGGCCCTTCCTAG
Seq C2 exon
GCTGAGCAGGAGCTCCGAGTGGCCCAGACGGAGTTTGACCGGCAGGCAGAAGTGACCCGGCTCCTGCTGGAGGGGATCAGCAGCACCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010626:ENSBTAT00000014049:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.167
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(2.5=100)
A:
NA
C2:
PF0311413=BAR=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development