MmuINT0143127 @ mm9
Intron Retention
Gene
ENSMUSG00000026860 | Sh3glb2
Description
SH3-domain GRB2-like endophilin B2 [Source:MGI Symbol;Acc:MGI:2385131]
Coordinates
chr2:30202131-30202624:-
Coord C1 exon
chr2:30202601-30202624
Coord A exon
chr2:30202221-30202600
Coord C2 exon
chr2:30202131-30202220
Length
380 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TGACTGCCTTCCCCGCCTAGGCT
3' ss Score
9.1
Exon sequences
Seq C1 exon
CTTTGGAACGATGAAGTCGACAAG
Seq A exon
GTGAGTTGGGGTTTAGGAAACTGGGGGATAAGGTCCAGAAGGTAGAGGGTAGGGGCCCAGACATAACTGCTGCTCTAAATGGAGTCTTTAGCTTTAAACTCACTGGGGTACTGGTTGGGGATCCCAATTCCCCCTACGGGGAATGGCTGTCCCATAGCACATTAGGTAGCAGCATCTCCTGATAGATTCTACTCTGTCAGACTGGGGAGGGTCTGACACTGCAGCTACCCACAGGTTCCAAATGGCTCTGGCTCCTCTGGATATAGGTTATAGGTGCAGAGCTGTGGGTAGGGCAGGCATCTGTGTTCCTGGAGGGCAGAGGGAAGGCTGGTGGAAAGGATGCAGGGGGCACTGCTCTCATGACTGCCTTCCCCGCCTAG
Seq C2 exon
GCTGAGCAGGAGCTTCGAGTGGCGCAGACAGAGTTTGACCGGCAGGCAGAAGTGACCCGTCTCCTGCTGGAGGGGATCAGCAGTACTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026860-Sh3glb2:NM_139302:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.178
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(2.7=100),PF0313112=bZIP_Maf=FE(8.0=100)
A:
NA
C2:
PF0311413=BAR=FE(11.4=100),PF0313112=bZIP_Maf=PD(25.0=73.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: