RnoINT0134726 @ rn6
Intron Retention
Gene
ENSRNOG00000017295 | Sh3glb2
Description
SH3 domain-containing GRB2-like endophilin B2 [Source:RGD Symbol;Acc:1305886]
Coordinates
chr3:8910997-8911474:-
Coord C1 exon
chr3:8911451-8911474
Coord A exon
chr3:8911087-8911450
Coord C2 exon
chr3:8910997-8911086
Length
364 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TGATATTGTTTCCCCCGCAGGCT
3' ss Score
10.99
Exon sequences
Seq C1 exon
CTTTGGAACGATGAGGTAGACAAG
Seq A exon
GTGAGTTGGGTCTTAGGGGACTTGGGGATAAGTGCTAAGACAAGGACAGGGAGGGACCCAGACATGACTGCTGCTGTAGATGGGGAGTCTTTCGCTTTCGATTGATTGTGCCTCACACTCTCTGGGGTCCTGGTCGGGGACACTAAACCCCCCTCTGGGAAATGATTGTCCCACAGAACGTTAGTTCCCATAGCAGCATCTCCTGATAGACTCTACCCTGTCAGGTTGGGAGGGTTTGTCACTGCACCTAGCCACAGCTTCCAAAAGGGCTCTGACATCCCTGGGTGTCAGCTGTAGGTGCAAAGCCAGGCGTTTAGAGCCAGGCCTCTGTTCCTGGAGGACGGTGATATTGTTTCCCCCGCAG
Seq C2 exon
GCTGAGCAGGAGCTTCGAGCGGCCCAGACCGAGTTTGACCGGCAGGCAGAAGTTACTCGTCTCCTGCTGGAGGGGATCAGCAGTGCCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017295:ENSRNOT00000023527:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=NA C2=0.233
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(3.8=100)
A:
NA
C2:
PF0311413=BAR=FE(15.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]