BtaINT0134621 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003491 | SLC25A23
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 [Source:HGNC Symbol;Acc:HGNC:19375]
Coordinates
chr7:19235826-19237222:+
Coord C1 exon
chr7:19235826-19236026
Coord A exon
chr7:19236027-19237095
Coord C2 exon
chr7:19237096-19237222
Length
1069 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
TGACCTTTCTCCCCTGCCAGGGC
3' ss Score
10.79
Exon sequences
Seq C1 exon
TGAGGCCGCCGCTGCCGGGCCTCCCCTCCCCCCCGGGCTGGCGCCATGCGGGGGGGCCCGGGCGAGGCCGAGCGGCGTCAGCGCTGGGGTCGCCTCTTCGAAGAGCTGGACAGTAACAAGGATGGTCGCGTGGACATCCGCGAGTTGCGCCAGGGACTGGCCCGGCTGGGCGGGGGCGATCCGGACCGCGGCGCCCAACAG
Seq A exon
GTACCCCCGCTGGGATACTCCTCCTGGTGCGCTGCGCTGGGCCCAGCTGGCGCCGGGTTATCTGAGCCCCTGAATGGAGCGCCGGGAGTCGCCCGTGACAGCCTGTGCTGGACTCCAGGATCCGTGCCTACCTTGAGCGTCCCTGTCTCTTTGCCTGTGCCCGCTCGTGTCCGGGCCTGACGGGATCTCTCAAGACAGGACAACCGAGGCCCCAGGCCTGCAGTTCAGGCTGCCAAACCCGTCCCCCTCCTCCCTCTGGGTGGAGGATGTCTGCCCGGGAATGGGGCCACGTGCGCTTTTCTGCCCACTGCCCAGGACACACCCTCCTCTGAACTCTTTGCACAACCCAGAGACATGGCCTGCACCCACCTACAGGAAACATGCCCTCCCTTCCCTCCTACCCGGCTCTGGGCACCCACTACTCTCCCAGGCAGCTGCCCCAGACTCTATGTTTACATTCCCTTCCCTGTCCTTTCTAGGACTTGGCTCAATGCCCCAAGTTGTCCCAGCCAAGGACCCAATCCTATCTGAGGCTGCCCTCAGCTGGGGATGCTCCTATCCAAGCAGGAACTTGACCCCAATCCCTCTACACCTGAAGACCCAGATGCCACTGGACTGTGTCCATAGCACCCTGAAACCTCCAATCACCCTCCCACTTTACAGATGGGTAAACAGAGGCCCAGCGGACGCTCAGTGTGGTTGTGTCCTTGCTACCACGTTGCCCAGCGCCGTCTCCAGTGAGAGCTCTTGAAACTGCCATGCGGACAAGTTCTTATAAGAGACAGCTGGAAGGACAGGCTTGCAGAAACAAAGAGCCCAGGTCCACCTATCTACTTCCCAGCTCTGTAACCTTGGACAAGTTACTTGACCTTGACGAGCCTCATTTTGCTCGCCAAGAAAGTTGGACAACTGCTGTCCACTGTACAGACCTACCATGGCCTTGGGCATCTTGTTGAGGGGAGAGCTGATGGCAGAGTGATGGGCTCAGGCTCCTGGGACATAAGCTTGTCATGCCCCACATTGTGGGAGTAGTTTAGAGGAGCTCTCTCTGACCTTTCTCCCCTGCCAG
Seq C2 exon
GGCATCTCCCCTGAGGGTGACACTGACCCAGATGGCGGCCTTGACCTGGAGGAGTTTATCCTCTACCTGCAGGAGCGGGAACAGCGCCTTCTACTTCTGTTCCACAGTCTGGACCGGAATCAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003491:ENSBTAT00000004536:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.233
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(63.6=80.8)
A:
NA
C2:
PF134991=EF-hand_7=PD(33.3=51.2),PF134991=EF-hand_7=PU(30.4=48.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGGGGTCGCCTCTTC
R:
ATCCTGATTCCGGTCCAGACT
Band lengths:
246-1315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]