HsaINT0151735 @ hg38
Intron Retention
Gene
ENSG00000125648 | SLC25A23
Description
solute carrier family 25 member 23 [Source:HGNC Symbol;Acc:HGNC:19375]
Coordinates
chr19:6458198-6459735:-
Coord C1 exon
chr19:6459473-6459735
Coord A exon
chr19:6458325-6459472
Coord C2 exon
chr19:6458198-6458324
Length
1148 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
ATCCCCTTTCCCTCTGTCAGGGT
3' ss Score
9.16
Exon sequences
Seq C1 exon
GCGGCCGCGGGAGCTGACCCTGCGGGGTCCCGGGGGGGGAGGGGGAGCCGCGAAGCCCCCACTGAGGCCGCCGCTGCCGGGCCTCCCCTCCCCCCCGGGCGGGCGCCATGCGGGGGAGCCCGGGCGACGCGGAGCGGCGGCAGCGCTGGGGTCGCCTGTTCGAGGAGCTGGACAGTAACAAGGATGGCCGCGTGGACGTGCACGAGTTGCGCCAGGGGCTGGCCAGGCTGGGCGGGGGCAACCCAGACCCCGGCGCCCAACAG
Seq A exon
GTACCCCCACCCCCAGGGACCTCCTCCCCTCCCGGCCCCGCCCGCTCCCGGTTACCCAAGCCCCTGAACTGGGCGGCCGGAGCCACCAGGGACTACCTGTGGCTGGACTCCAGAACCTGTGTCTCTGTCTCGTTCCCCCTACCCACTCGTGTTTGGCCTAACGGGATCGCTCAAGACAGGGACGCCGAGGCCCCAAGCCTGCAGTTCCGCGGCCAACACCCGATCCCCCTGCTGCGGGGCAGGGGGCGTCTGCCTGGGAAGAGATGGGGGCGCTTTCCTGCCCACTGCCCGGGACACACCCTCCTCCAGACTGCACAGCCCATGACGTGCCCTGCTCTCACCTCCAGGAGACACACCCTCCATCCTCTGGGCACCTACTGCCCTGGCCTGCAGCTGCCCCGATCCCTGTGTTTACATTCCCTGGCCTGCCCTTTCATGGGCCGTTCACGGGCCTGGCTCACTGTCCCGGGCTGCCCCAGCCAGGGACCCAATCCTGTCTGCGGTCACCCGCAGCTGGGAATGCACCTATAACAAGACTTTCCTCCCGCTGCCCCCACCTCCACTTTGCAGGTCCTTCCCACACCTGTAGCCCCAGATCGCTCTAAGAGAACCACAGCAACCCTGAGAGCAGTCCAACCTCCCACTTCCCAAATGGGAAAAACCAAGGCCTCAGCCACTCCGCTTGGTTCTCTCCTGCCCCACATCGCCCAGGGCTTCCTCCAAAGGGAACCCCTGGGTCCCCCATGTGGACAGGGTTTTTTAAGAGGCAGCTGGGTTCAACAGGAATGAGATACCTAAAAAAATAACAAAAACTAAAAACAAGAGACAGCTGGAAGGACAGGCTTTACAGATGAGAACTGAGGTTACCATTTCCTGGTTCTGTGACCTTGAACTGGTGACTTGACCTTGCAGAGCCTCAGTTTGCTCACCAGGAAAACTAGACCACTCACACCCACCGCACAGACCTGTGGTGGCTGTAGGGATCTGGCTGAGAAGTTAGCTGACTGAGGGAGAAGTGGGGTGACGTCTTCTATCCCCTTCCTCAAGGCGCTGGGGGCTCTGGGTTCCTAAGGCATAAGGTGACATGCGTCCCCTCCAGATCAGGAGCAGGTTCCTGGAGCCACCTCTATCCCCTTTCCCTCTGTCAG
Seq C2 exon
GGTATCTCCTCTGAGGGTGATGCTGACCCAGATGGCGGGCTCGACCTGGAGGAATTTTCCCGCTATCTGCAGGAGCGGGAACAGCGTCTGCTGCTCATGTTTCACAGTCTTGACCGGAACCAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125648:ENST00000301454:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.769 A=NA C2=0.258
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(63.6=80.8)
A:
NA
C2:
PF134991=EF-hand_7=PD(33.3=51.2),PF134991=EF-hand_7=PU(30.4=48.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCCCCACTGAGGCC
R:
CTGGTTCCGGTCAAGACTGTG
Band lengths:
335-1483
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains