HsaINT0151735 @ hg19
Intron Retention
Gene
ENSG00000125648 | SLC25A23
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 [Source:HGNC Symbol;Acc:19375]
Coordinates
chr19:6458209-6459781:-
Coord C1 exon
chr19:6459484-6459781
Coord A exon
chr19:6458336-6459483
Coord C2 exon
chr19:6458209-6458335
Length
1148 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
ATCCCCTTTCCCTCTGTCAGGGT
3' ss Score
9.16
Exon sequences
Seq C1 exon
AGAGCCGAGCGGACTGCGCGGAGGCTGCGGAGCCGGCGGCCGCGGGAGCTGACCCTGCGGGGTCCCGGGGGGGGAGGGGGAGCCGCGAAGCCCCCACTGAGGCCGCCGCTGCCGGGCCTCCCCTCCCCCCCGGGCGGGCGCCATGCGGGGGAGCCCGGGCGACGCGGAGCGGCGGCAGCGCTGGGGTCGCCTGTTCGAGGAGCTGGACAGTAACAAGGATGGCCGCGTGGACGTGCACGAGTTGCGCCAGGGGCTGGCCAGGCTGGGCGGGGGCAACCCAGACCCCGGCGCCCAACAG
Seq A exon
GTACCCCCACCCCCAGGGACCTCCTCCCCTCCCGGCCCCGCCCGCTCCCGGTTACCCAAGCCCCTGAACTGGGCGGCCGGAGCCACCAGGGACTACCTGTGGCTGGACTCCAGAACCTGTGTCTCTGTCTCGTTCCCCCTACCCACTCGTGTTTGGCCTAACGGGATCGCTCAAGACAGGGACGCCGAGGCCCCAAGCCTGCAGTTCCGCGGCCAACACCCGATCCCCCTGCTGCGGGGCAGGGGGCGTCTGCCTGGGAAGAGATGGGGGCGCTTTCCTGCCCACTGCCCGGGACACACCCTCCTCCAGACTGCACAGCCCATGACGTGCCCTGCTCTCACCTCCAGGAGACACACCCTCCATCCTCTGGGCACCTACTGCCCTGGCCTGCAGCTGCCCCGATCCCTGTGTTTACATTCCCTGGCCTGCCCTTTCATGGGCCGTTCACGGGCCTGGCTCACTGTCCCGGGCTGCCCCAGCCAGGGACCCAATCCTGTCTGCGGTCACCCGCAGCTGGGAATGCACCTATAACAAGACTTTCCTCCCGCTGCCCCCACCTCCACTTTGCAGGTCCTTCCCACACCTGTAGCCCCAGATCGCTCTAAGAGAACCACAGCAACCCTGAGAGCAGTCCAACCTCCCACTTCCCAAATGGGAAAAACCAAGGCCTCAGCCACTCCGCTTGGTTCTCTCCTGCCCCACATCGCCCAGGGCTTCCTCCAAAGGGAACCCCTGGGTCCCCCATGTGGACAGGGTTTTTTAAGAGGCAGCTGGGTTCAACAGGAATGAGATACCTAAAAAAATAACAAAAACTAAAAACAAGAGACAGCTGGAAGGACAGGCTTTACAGATGAGAACTGAGGTTACCATTTCCTGGTTCTGTGACCTTGAACTGGTGACTTGACCTTGCAGAGCCTCAGTTTGCTCACCAGGAAAACTAGACCACTCACACCCACCGCACAGACCTGTGGTGGCTGTAGGGATCTGGCTGAGAAGTTAGCTGACTGAGGGAGAAGTGGGGTGACGTCTTCTATCCCCTTCCTCAAGGCGCTGGGGGCTCTGGGTTCCTAAGGCATAAGGTGACATGCGTCCCCTCCAGATCAGGAGCAGGTTCCTGGAGCCACCTCTATCCCCTTTCCCTCTGTCAG
Seq C2 exon
GGTATCTCCTCTGAGGGTGATGCTGACCCAGATGGCGGGCTCGACCTGGAGGAATTTTCCCGCTATCTGCAGGAGCGGGAACAGCGTCTGCTGCTCATGTTTCACAGTCTTGACCGGAACCAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125648-SLC25A23:NM_024103:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.769 A=NA C2=0.302
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(63.6=80.8)
A:
NA
C2:
PF134991=EF-hand_7=PD(33.3=51.2),PF134991=EF-hand_7=PU(30.4=48.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCCCCACTGAGGCC
R:
CTGGTTCCGGTCAAGACTGTG
Band lengths:
335-1483
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)