BtaINT0134622 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003491 | SLC25A23
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 [Source:HGNC Symbol;Acc:HGNC:19375]
Coordinates
chr7:19237096-19237868:+
Coord C1 exon
chr7:19237096-19237222
Coord A exon
chr7:19237223-19237780
Coord C2 exon
chr7:19237781-19237868
Length
558 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
CCCTCGGCCCCCCTCCCCAGGTC
3' ss Score
11.23
Exon sequences
Seq C1 exon
GGCATCTCCCCTGAGGGTGACACTGACCCAGATGGCGGCCTTGACCTGGAGGAGTTTATCCTCTACCTGCAGGAGCGGGAACAGCGCCTTCTACTTCTGTTCCACAGTCTGGACCGGAATCAGGATG
Seq A exon
GTAAGGCCCAGGGATGGGGCTGTGGGGGCCCTGGAGACCCCAATGGGGTTAGAACTGGCAGTGCCAGGAGGAAGGGGGGAGGGCCGCTTCTCCCTGATGACTCACAGGCTATTTCGGGAGCTTTCCTCACCCTCAGCTAGGTGCTTCTGGGCCCAGCTGGCCTATCCCACCTCCTTTTCCTAATGGGGTGGGACCCTATTATTTATTAGTGTTATTATTTGTGATGCAAAGATTCCCCTCCCCACATTGCTCCTGGATTCCCTGTGAGACAGAGCCACCCCCATCACATTTTCTGGATGTCCAGTGTGGCCTCAACTCCCTGTGGCATGGGGACCCCAATAATTACTCCTGGACTTAATCCTTCATTCAGCAAATGCAAGTCCCTCCCAATATGAACCAATTCCACCTCTCTGATCCCAGTGGGTCAAGGGCCCCTCCCTGCAACCTTGCCACACACCTCACCTTGGGTTTCTGCATGCCCTAGTCTTGTTAGACATCCCCAGTCCAAGCTATTATGGTCCTCTGACTCAGGGTCCCCCCCTCGGCCCCCCTCCCCAG
Seq C2 exon
GTCAGATTGACGTCTCTGAGATCCAGCAGAGTTTCCGAGCCCTAGGTATTTCCATCTCACTGGAACAGGCAGAGAAAATCCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003491:ENSBTAT00000004536:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(33.3=51.2),PF134991=EF-hand_7=PU(30.4=48.8)
A:
NA
C2:
PF134991=EF-hand_7=FE(42.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGAGGGTGACACTGACC
R:
TGTGCAGGATTTTCTCTGCCT
Band lengths:
206-764
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]