DreINT0149974 @ danRer10
Intron Retention
Gene
ENSDARG00000005690 | slc25a23a
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23a [Source:ZFIN;Acc:ZDB-GENE-121214-154]
Coordinates
chr1:54309871-54310655:-
Coord C1 exon
chr1:54310529-54310655
Coord A exon
chr1:54309959-54310528
Coord C2 exon
chr1:54309871-54309958
Length
570 bp
Sequences
Splice sites
5' ss Seq
ATGGTTAGT
5' ss Score
7.07
3' ss Seq
CACTTCTGTGTGTTTTGTAGGTG
3' ss Score
10.97
Exon sequences
Seq C1 exon
CAGATTGTACGAGCGGGAGACATCAATCACGACGGTCAGCTGGACTTCGAAGAGTTTACCGAGTACCTGCGCTCACATGAGAAACGCCTTAGACTCATGTTTCGCAGCCTGGACCGAAACAATGATG
Seq A exon
GTTAGTTGGTTATAAACTCTCAATTTAGCATTAGCTTTTACCCTCACCTTAGCATGTGCATACTGTTGGTCACTTTATAACATCACATTGCCCGTAGCCTCTACTAAAAAAACTGCTTAAACCAGCCTATGCTGTTTTAGAGGGGTTTTGGCCATTAACAGGATGGTTTCCAGCCATTTCCAGCCTGATCTTAGGCTGGGAGATGACCAGCTAAAACCAGCTTGACCAGCCTAGCCAGGCTGGGAGCTATGTCCAGCTTAAACGAGGCTGGTCAAACAGGTTTTAGCTGGATTTAGCTGGTCATTTTCCAGCCTGACCAGCTAAGACCAGGCTGGAAATGGCTATAAAATAGCCTGGAAATGGCCAAAACCCCTCTAAAACCAGCCTGGTCGACCAGCTAAAACAGCCTACGCTTGTTTAAGCTGTTTTTTTCAGCAGGGGCAGCTACCGATAATACTGTTAGCATCTAGATTAGCATTTTAGCATTAGCATATAACCAATTAAATCACTCTTAAGAGCTATTCTTCAGTATAATAACACATAATTGATGCACTTCTGTGTGTTTTGTAG
Seq C2 exon
GTGAAGTGGATGTCGGGGAGATCCAGCAGTCCTTACACAATCTCGGCGTGGACATCACACTAGAACAGGCTGCTAAAATACTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005690:ENSDART00000152666:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(31.8=50.0),PF134991=EF-hand_7=PU(23.8=35.7)
A:
NA
C2:
PF134991=EF-hand_7=FE(46.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTGTACGAGCGGGAGACA
R:
CTTTGCAGTATTTTAGCAGCCTGT
Band lengths:
214-784
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]