MmuINT0145584 @ mm10
Intron Retention
Gene
ENSMUSG00000026819 | Slc25a25
Description
solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25 [Source:MGI Symbol;Acc:MGI:1915913]
Coordinates
chr2:32421303-32421599:-
Coord C1 exon
chr2:32421473-32421599
Coord A exon
chr2:32421391-32421472
Coord C2 exon
chr2:32421303-32421390
Length
82 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
AATGGTTCTCGTTGTCACAGGTC
3' ss Score
9.02
Exon sequences
Seq C1 exon
AAAATTGTGCAAGCAGGTGACAAGGACCTTGATGGGCAACTGGACTTTGAAGAGTTTGTACATTACCTCCAAGATCATGAGAAAAAACTGAGGCTGGTGTTCAAGAGTCTGGACAAAAAGAATGATG
Seq A exon
GTGAGTTTAGCTATAGCTTCTCTGCCGGGCAGGCCTTAGCTTACTGAATGCTGGACCCTGCTAATGGTTCTCGTTGTCACAG
Seq C2 exon
GTCGAATCGATGCTCAGGAGATCATGCAGTCCCTGCGGGACCTGGGTGTCAAGATCTCGGAACAGCAGGCGGAGAAGATTCTTAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026819:ENSMUST00000113310:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.004
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PD(92.6=58.1),PF134991=EF-hand_7=PU(24.1=44.2)
A:
NA
C2:
PF0003627=EF-hand_1=PU(28.0=31.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACAAGGACCTTGATGGGC
R:
AGATCTTGACACCCAGGTCCC
Band lengths:
168-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types