HsaINT0151757 @ hg19
Intron Retention
Gene
ENSG00000148339 | SLC25A25
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 [Source:HGNC Symbol;Acc:20663]
Coordinates
chr9:130863375-130863675:+
Coord C1 exon
chr9:130863375-130863501
Coord A exon
chr9:130863502-130863587
Coord C2 exon
chr9:130863588-130863675
Length
86 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
CACGGCCTCTGTTCTTGCAGGAC
3' ss Score
10.96
Exon sequences
Seq C1 exon
AAAATTGTACAAGCTGGAGATAAGGACCTTGATGGGCAGCTAGACTTTGAAGAATTTGTCCATTATCTCCAAGATCATGAGAAGAAGCTGAGGCTGGTGTTTAAGAGTTTGGACAAAAAGAATGATG
Seq A exon
GTAAGTGTTGCCTTCAGAGCTGTGGCCGGTCCAGCCTCGGGCCTCCCCGTGCGCCTGGCTCCTGCTCACGGCCTCTGTTCTTGCAG
Seq C2 exon
GACGCATTGACGCGCAGGAGATCATGCAGTCCCTGCGGGACTTGGGAGTCAAGATATCTGAACAGCAGGCAGAAAAAATTCTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148339-SLC25A25:NM_001006643:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.006
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PD(92.6=58.1),PF134991=EF-hand_7=PU(24.1=44.2)
A:
NA
C2:
PF0003627=EF-hand_1=PU(28.0=31.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTGATGGGCAGCTAGACT
R:
TTTTTCTGCCTGCTGTTCAGA
Band lengths:
179-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)