MmuINT0145584 @ mm9
Intron Retention
Gene
ENSMUSG00000026819 | Slc25a25
Description
solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25 [Source:MGI Symbol;Acc:MGI:1915913]
Coordinates
chr2:32276823-32277119:-
Coord C1 exon
chr2:32276993-32277119
Coord A exon
chr2:32276911-32276992
Coord C2 exon
chr2:32276823-32276910
Length
82 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
AATGGTTCTCGTTGTCACAGGTC
3' ss Score
9.02
Exon sequences
Seq C1 exon
AAAATTGTGCAAGCAGGTGACAAGGACCTTGATGGGCAACTGGACTTTGAAGAGTTTGTACATTACCTCCAAGATCATGAGAAAAAACTGAGGCTGGTGTTCAAGAGTCTGGACAAAAAGAATGATG
Seq A exon
GTGAGTTTAGCTATAGCTTCTCTGCCGGGCAGGCCTTAGCTTACTGAATGCTGGACCCTGCTAATGGTTCTCGTTGTCACAG
Seq C2 exon
GTCGAATCGATGCTCAGGAGATCATGCAGTCCCTGCGGGACCTGGGTGTCAAGATCTCGGAACAGCAGGCGGAGAAGATTCTTAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026819-Slc25a25:NM_001164358:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PD(92.6=58.1),PF134991=EF-hand_7=PU(24.1=44.2)
A:
NA
C2:
PF134991=EF-hand_7=FE(38.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACAAGGACCTTGATGGGC
R:
AGATCTTGACACCCAGGTCCC
Band lengths:
168-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: