RnoINT0136930 @ rn6
Intron Retention
Gene
ENSRNOG00000014338 | Slc25a25
Description
solute carrier family 25 member 25 [Source:RGD Symbol;Acc:628666]
Coordinates
chr3:11449228-11449526:-
Coord C1 exon
chr3:11449400-11449526
Coord A exon
chr3:11449316-11449399
Coord C2 exon
chr3:11449228-11449315
Length
84 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CACCAACCTTGTCGTCACAGGGC
3' ss Score
6.7
Exon sequences
Seq C1 exon
AAAATTGTGCAAGCAGGTGACAAGGACCTTGATGGGCAACTGGACTTCGAAGAGTTTGTACATTACCTCCAAGACCATGAGAAAAAACTGAGGCTGGTGTTTAAGAGTCTGGACAAAAAGAATGATG
Seq A exon
GTGAGTTGGCCTGTTGTAGCTCCCCTGCTGGGCGGCCTTGGCTTACCGAAGGCCGGACCCTGCTCACCAACCTTGTCGTCACAG
Seq C2 exon
GGCGAATCGATGCTCAGGAGATCATGCAGTCCCTGCGGGATCTGGGTGTCAAGATCTCTGAACAGCAGGCGGAGAAGATTCTTAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014338:ENSRNOT00000020206:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PD(92.6=58.1),PF134991=EF-hand_7=PU(28.8=44.2)
A:
NA
C2:
PF134991=EF-hand_7=FE(43.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAACTGGACTTCGAAGAG
R:
AATCTTCTCCGCCTGCTGTTC
Band lengths:
174-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]