RnoINT0136912 @ rn6
Intron Retention
Gene
ENSRNOG00000047781 | Slc25a23
Description
solute carrier family 25 member 23 [Source:RGD Symbol;Acc:1588586]
Coordinates
chr9:9989488-9990797:+
Coord C1 exon
chr9:9989488-9989614
Coord A exon
chr9:9989615-9990709
Coord C2 exon
chr9:9990710-9990797
Length
1095 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
CTGGGGCTCCCCTTTTCCAGGTC
3' ss Score
10.5
Exon sequences
Seq C1 exon
GGCATCTCCTCTGACTGGGACAGTGATGCAGATGGCGGCCTCAGCCTGGAGGAGTTTACTCAGTACCTGCAGGAACGGGAGCAGCGCCTTCTGCTCATGTTTCACAGCCTTGACCGGAACCAGGATG
Seq A exon
GTGAGATGGGCTGTCTCTAAGCTGGGGAATAGACAAGTGGGTTAGACTCTGAAGCTCTGGGGGAATGGGGAGGGCTGTCTCTGACTCATGGGCTATTTCAGGAGTTCTCAGCCACAACTAGGTGATTGGAGCCTGAACTGGCCCATCCCACCTCCTGTTCCTTTTGCCCTAGGACCCCTCTCTACCCTTCCATGTTTCTTTTCAGACAGTATAGTAGGTTCAGAGACCCTCAGATGCAAGGATACAAGACCCCTTGACTAAGCATCTTCTAGGTTCCTTAAGTATTACCTTACAGTTGGAGATATAGATCAAGGGGTAAAGTGCTTGCCACAAAACCACCAATTCCTGAGCTCAATCCCTAGTTCCCATGCCCATGAAAAAGCTGGATGTGGAGGTACATGCCTGTAAGCCCACCCCTGGAGAGGGGAAGATGAAAAATGAGTAAATAACCAAATATGGCTTTAGTTCCTTGTAGCATCGGTACCTCTGTTGTCACCCCTGAACTCACTCGTTCACTCCTGGGAGAGAGGACTTTCCAATATCACTCAGTTTCAACCTCGAGCAGCCTCCACAACCCGTATAAAAATCTCTCCCCATACCAAGGTGGCAAACGACTTTGATCCCAGCACTCTGGAGGCAGAGGGGCAAGCAGACCTCTGAGTTTGAGGCCAGACTGGTCTACAGAGTGAGTTCCAGGATAGCTAGGGTTATAAGAGAAACCCTGTCTCAAAGGGGAGAAAGGAGGCATCTCCCATGAGGCTGAGGAGCTGACTCAGTCAGAGAGGGATCTGAGTTCAAGCCCCAGAACCTGTGTTAAGAAGCTGAGTGTGGTGGTGCCTACCTGTGACCCAGCACTGATAAAGGAGACTGCAGTTGGTGAGGTGAATCTTAGAGTTCAACTTCCAGATAAATCAGTGAACTCCAGGTTCAGTGAGAGACCCTGTCTCAAAGGAAAGATGGAGAGAGACTGAAGACAGCCATCTACCTGTGGCCTCCTCATACACACACACACACAGAAGTGTGCGCATATGCAGGGCTTCTGGATCTCCCAGTCCAGCCTGGCCTTTGGGTGTCTCTGGGGCTCCCCTTTTCCAG
Seq C2 exon
GTCACATCGATGTCTCTGAGATTCAGCAGAGCTTCCGTGCACTGGGTTTCTCCATCTCAATGGAGCAAGCAGAGAAAATCCTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047781:ENSRNOT00000073000:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.151 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(33.8=51.2),PF134991=EF-hand_7=PU(22.5=41.9)
A:
NA
C2:
PF134991=EF-hand_7=FE(36.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTCCTCTGACTGGGACA
R:
CTGTGTAGGATTTTCTCTGCTTGC
Band lengths:
214-1309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]