MmuINT0145564 @ mm10
Intron Retention
Gene
ENSMUSG00000046329 | Slc25a23
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 [Source:MGI Symbol;Acc:MGI:1914222]
Coordinates
chr17:57056582-57058234:-
Coord C1 exon
chr17:57058108-57058234
Coord A exon
chr17:57056670-57058107
Coord C2 exon
chr17:57056582-57056669
Length
1438 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
CTGGGGCTCCCCTTTTCCAGGTC
3' ss Score
10.5
Exon sequences
Seq C1 exon
GGTGTCTCCTCTGACTGGGATGCTGATCCTGATGGTGGCCTCAGCCTGGAGGAGTTTACTCGCTACCTGCAGGAACGGGAGCAGCGCCTTCTGCTCATGTTTCACAGCCTTGACCGGAACCAAGATG
Seq A exon
GTGAGATGGGCTCTAGGCTGGGGAATGGACAAGTGGGTTAGAACCCGAAGCGCCGGGGGAATGGGGAGGGCTGCTTCTGACTCATGGACTATTTTGGGAGTTCTCAGCTGCAACTAGGTGATTTGAGCCTGAACTGGCCCATCCCACCTCCTATCCCTTTTGCAGTAGGACCCCTCTCTCTGCCCATACACGTTTCTCTTCAGACAGTATACTTGGTTCGGAGACCCTCAAATACAAGGATAGACCCTTAACCAAGCATCTTCTGGGTTCCTTAAGTATTACCTTAAAGTTGGAGAGCTAGATCAGGGGTAACGTGGTTGCCACAAAGCCACAAGTCCCTAAGCTCAATCCCTTGTCCCCATAGATGCAGAGGTACATGCCTGTAAGCCCAGCCTTGGAGAGGGGGAGATGAAGAAAATGAATAATAATCAAATATTGCTTTAGTCCCTTGTAACATAGGAACCTCTGTGATCACCCCTGAACTCACGCATTCACTCCTGGAATAGAGAACTCTCCAATATCAACCCTGAGCAGCCCCCACAACCTGTATAAGAACCTCTCTCCTTACCATGGTGGCAAACAACTTTGATCCCAGCACTCAGGAGGCGGAGGGGCAGGCAGATGTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTTCAGGACAGCCAGGGCTACACTGAGAAACCCTGGCTCAAAGGAGAGGTGGGAGGAGTCTCCCATGAGGCTGAGAAGCTGACTCAGTCAGAGAGGGACTGGAGTTCAAACCCCCGCACCTGTGTTAAAAAGCTAGGTATGGGGCTGGTGAGATGGCTCAGTGGATAAGAACACCGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCTCAGCAACCACATGGTGGCTCACAACCACCCGTAATGAGATCTGACGCCCTCTTCTGGTGTCTGAAGACAGCTACAGTGTACTTATGTATAACAATAAACATCTAAAAAAAAAAAACCACTTAAAAAAATAAAAAAGCTAGATGGGCATGGTGGTGCACGCCTTTAATCCCAGCACTGGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGCTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAACCAAAAAAAAAAAAAGCTAGGTATGGTGGTGCCCACCTGTGACCCAGCACCGGTGAGGTAGAGACTGGAGGTGGTAAGGTGGATCTTAGGGTTAGACTTCCAGATAAGTCACCGGACTCCAGGTTCAGCAAGAGACCCTGTCTCAAAAGAAAGATGGAGAAAGACTGAAGACAGCCATTGACCTCTGGCCTCTTCATCCACACGCACACAGAAGCACACACACAAGGGCTTCTGGACCTCCCAGTCCAGCCTATGTATGGTTTGGGTGTCTCCTGGGGCTCCCCTTTTCCAG
Seq C2 exon
GTCACATAGATGTCTCTGAGATTCAACAGAGCTTCCGAGCACTAGGTATCTCCATCTCACTGGAGCAAGCAGAGAAAATCCTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046329:ENSMUST00000040280:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.186 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(33.8=51.2),PF134991=EF-hand_7=PU(28.4=44.2)
A:
NA
C2:
PF134991=EF-hand_7=FE(43.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTCTCCTCTGACTGGGAT
R:
TGTGTAGGATTTTCTCTGCTTGCT
Band lengths:
214-1652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types