BtaINT0134947 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016775 | SLC27A1
Description
Bos taurus solute carrier family 27 (fatty acid transporter), member 1 (SLC27A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001033625]
Coordinates
chr7:5532597-5535449:-
Coord C1 exon
chr7:5535303-5535449
Coord A exon
chr7:5533997-5535302
Coord C2 exon
chr7:5532597-5533996
Length
1306 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
3' ss Seq
TTCCGCCCCCGTCCCCACAGGCA
3' ss Score
12.23
Exon sequences
Seq C1 exon
GAGTAGAGGGCAAAGCAGGCATGGCAGCCATCGCAGACCCCCATGGCCGGCTGAGCCCCAACGCACTGTACGAGGAACTGCAGAAGGTGCTGGCGCCCTATGCCCGGCCCATCTTCCTGCGCCTCCTGCCCCAGGTGGACACTACAG
Seq A exon
GTGCAGCCCCCTGCCTCTCCGTCCGCCCATTTGTCAGTTTCTCAACCATTTACTTACCCGTTCTGGTTCAGCCCCTGTGCCTGGTCTAACCTGCTGTCCACGGCCAGCTGGCACTATGAGCTAAGCTCTCCTCTTGTCATATTTGTGCGCTTCCTCCTTCCCGTTCCTCACTCCTACCCCACTGGCCATCCTGCAACGTTTGCTGCATCTCTTCATTTTCGGCATTTTTCCGAGGACTAGGGAATTTGAGTGAATCATCTCACACCTTTGAGGTTTCCTATTCTGTAAATCACCTGCTCGTATCTAGTATTGTCTCATTCTTTCCTTGTGATTTATGGGAGTTCCTCCTAATAGTGTAGATGTTAATTCCTTAGCAATTTCAGACATTTTAAATCTCCTCTATTTTGGAATCTGTTAACTTTGTCCATGGTGCCCATTATTGAAAAGAAGCTTTAATTTTGATACAAAGGTGAACACCACCATCATCACCTCTGCCTCTGCTTTTTTAATCTTGAGGTTTGTACTTTTCCAGTTTCTTTCTTTTTTATTTTAATGGCCAAGCAGCATAACTTGCAGGATTTTAGGATCAAACCGGTATCCCCTGCAGTGAAAGTGCAGAGTCCCAAATACCAGGGAAGTCCCTGAAGTTTCATTAAAAAGAAAAAAAAAAAACCAAAAACCAACCTTCCTAATTCTTGAGCACACAGGGATTCTCCCTCGATTTTCTACAAACCCAGATCTTTCACAAAACCCCTCTTTAATTGTCTACTTCAGGGAGTGCAAACTTTTTCTTTAAGGCCCAGATAGTAAATATTTTCAGTTTTGCGGGCCACAGCCTCTGCAGCAATGATTCATCTCCTCAGCTGTAGGGCAGAAATAGCAGTGAGTAGTGTGTATGTGTCTGGGGGTGGCTTCCTCAGGTAGGGGGTTGAATTTGGTCCGTGGGTGGATCATGGGCCTATAAGTTGCTGACCCCTGACCTCCTGTGTGACCGACCCAGCCCTTTCACCTTCTTGGTCTTGTGTGGGGTGGACATGTGACAGGCAGGGAGTATACATGGAGTTTTGGGTCATGCGGGAGGTGGTCAGGGAGGCCTCCCTGGCAGAGGGAGCATGAAGCTGAGATCCAAAGGCCAAGGGGGAATCAGGAGGGCAAAATGGAGAAGAATGCTTCTGGCAGAGGGGACAGCCTATTCAGAGGCCTGGAGGTGCCAGAGAGAGTAGTTAGCTGGGGCAGGGGGTTCCTGGCAGCCCCCTGCCAAGTTCCCACCCCACCCCCACCCCTACTTCCGCCCCCGTCCCCACAG
Seq C2 exon
GCACCTTCAAAATTCAGAAGACCCGGCTGCAGCACGAGGGCTTCGACCCACGCCAGACCTCGGACCGGCTCTTCTTCCTGGACCTGAAGCAGGGCCACTACCTGCCTCTGGATCAGGGTGTCTACACCCGCATCTGCTCAGGCGCCTTCGCCCTCTGACACTCCTCTGTTGGCCCAAGACTCCGCACCAGGCCCAGCGAGCAGGGTGGGCTGGAGCCAGACAGACAGCCCTGCCCTGTCCTGGGGCAGAGAAGCCGGATCGCAGGAGGAGCCCTTGTTTCCCACCTTCATCCTCCTCCTCTCCACCAGCTGGCTGCCCCTGCCTGTCTTCCATTCTCGTGTCTGTGTGTCTGTCTGTGCTCCCTGCTTCTGGGCCTCCCCGCTGTCCCTGACTGCCCTCCCCTCTTCCTCCATCTCTCCTCCCCTGCTCACTTCCTGCCAAAAGTAGAACAGACGTTTCTGGGAGCTGCAGTCTGTGCGGGGGCCCACAGCTGTCCTGGGGGCCTCTTCGGGTCCTCCCGCAGAGGGTGGTAAACCCAGAGTGGGGCTGCTCCACCTCCCTCTCAGCTGTGCCTTATTAACAAACCCCACCCAGCCCAGCCTTCCCTAGGCTGCTGGATTCCAGGACATTGTAGCCCTGTAGGAGCTCCAGGCAGCCCCTCTGCCTTCCTTGCTGAATGAGGAGCTAGGGATAGTCTGTCTGGACAACCTGGGGGGGGCCTCGGCCCAGGGCCCTCCAGGTCAGCAGGGATTTTCTGCCCAGCTGGGCCAATTGCCTTTTGCACTTCCTGTCCCTGGTGGCTCTCCCTTGTCTTGCCTGCCTTTCCTGATGCCCCAGAAACTTCTGGAACTGACTGTGACCACTTGGATATTGCTCCTGCCCAGTTGTCACCATGGAGCTCCTGCTGGAGGGGACCTGAAGATGGCCCTGGGAGGCTGCTTGGCCCACTGCTCAGATGCTTACCCTGGAGGAGGCCTCTTGGGGACCCCACCTGCCATGGCTGCTGGCAGGACCCAGGGGAATGGCAGCAGTGGCTTTGGGGGAGCTGCCAGGTCAGGGGTGGCCTCTGAGATGCCCTCAGGGGTTCCTGCCTATTGACTGTTCCCCTGACCTTGCTAGTGACAACTTGGACCCTTGATTGGTGACATCCCGAGACCACCCCGCCAGGACAGCCCGGACCTTCCCATCAGCTTCGTCGGTGGCTCATCCCAGACACCCATCGGTGGGGCTGGCCACCGAGACTGCCCCCCGTCCCTCCCTCTGGCAGCACCGCCCGGCAGCTAGAACAGCAAGGCCAGTAGCAAATGACCCCGTGCTGTTTCGCATGGGCCTTTTCAAGCACTGAGGTTTTGTTTCCTCGTTGAGTTTAAGAAATAAACCTGCAGAGCGTCTGGTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016775:ENSBTAT00000055878:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF131931=AMP-binding_C=FE(64.5=100)
A:
NA
C2:
PF131931=AMP-binding_C=PD(3.9=5.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACGCACTGTACGAGGAAC
R:
CTTCTCTGCCCCAGGACAGG
Band lengths:
343-1649
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]