HsaINT0152094 @ hg19
Intron Retention
Gene
ENSG00000130304 | SLC27A1
Description
solute carrier family 27 (fatty acid transporter), member 1 [Source:HGNC Symbol;Acc:10995]
Coordinates
chr19:17612082-17616977:+
Coord C1 exon
chr19:17612082-17612228
Coord A exon
chr19:17612229-17615263
Coord C2 exon
chr19:17615264-17616977
Length
3035 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGA
5' ss Score
7.75
3' ss Seq
GCCCCCCATCCCCACTATAGGCA
3' ss Score
7.94
Exon sequences
Seq C1 exon
GAGTGGAGGGTAAGGCAGGGATGGCGGCCGTCGCAGACCCCCACAGCCTGCTGGACCCCAACGCGATATACCAGGAGCTGCAGAAGGTGCTGGCACCCTATGCCCGGCCCATCTTCCTGCGCCTCCTGCCCCAGGTGGACACCACAG
Seq A exon
GTGCGAGTCTCCCCCACTCCAATCTCTCTCTTCATCCATCAGTGTGTCTGTTGATTCATGTCTTGGTCCATTTTGTGTTGCTCTAAAAGAATACCTGGCCGGGGCCAGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTGAGGAGATCGAGAGCATCCCGGCTAACACAGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCACGGTTGCGGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAACCTGGGAGGCGGAGTTTGCAGTGAGCCCAGATCACGCCACTGCACTCCAGCCTGGGCGATAGAGTGATACTCTGTCTCAAAAAAAAAAAAAAAAAAAGAATACCTGGCCGGGTGTGGTGGCTCCCGCCTGTAATCTCCGCACTTTGGGAGGCTGAGGCAGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACTGTGTCTCTACTAAAAATACAAAAAAAAATTAGCCAGGCATGGTGGCATGCACTTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGAAGAATTGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATCAGGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACAATGTCTCAAAATAATAATAATAATTTCAACATGATTTTTGGTGCGGACAAACAAACCATATCCAAACCATTTACTCATCCTAGTTCAGGACAGTGTCCTGGGACTGACACAAGGGCTCACAGCCAGCTAGCACTGTGGGCTCTCACGGGTCCCTTCTGCTGTTTTATTTTAGTAGTTATTTATTTCCATTCCTCACTTCCACTGCCACTAAGCATTCTGAAATAGTGTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTACCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAATAGCTGGGATTACAGGTGTGCACCACCATGCCCAGCTAATTTTTTTGTATTTTTAGTAGAGATCGAGTTTTACCATATTGGCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCACCTGCCTTGGCCTCCCAAAGTGTTGGGATTACACACATGAGCCACTGCACCCGGCCTCGGTGTATCTTTTCTTTTTCTTTTGTTTTTTTTGTTTGTTTGTTTGTTTGAGACAGGGTCTTACTCTGTTGCCCAGGCTGGCATGCAGTGGCACTATCATAGCTCACTGCAGCCTCAGCCTCCTGGGTTCAAATGATCCTCCCACCTCAGCCTCTGGAGTAGCTAGGACTACAGGCAGGCACCACCATGCCTGACTAATTTTTTTGATTTTTTGTAGAGATGGGGTCTGTATTAGTCCATTCTCATGCTGCTAATAAAGACATATCCGAGACTGGGTAATTTATAAAGGAAAGAGGTTTAATGGAACTCACAGTTCCACATGGCTGGGATGGCCTCACCATCATGGCAGAAGACGAAGGAAAAGCAAAGGGACTTTTTAATGGTGGAGGGCAAGAGAGTGTGTGCAAGGGAACTCCCCTTTAAAAACCACCAAATAAAGCCATCAAATCTCGTGAGACCCCTTCACTATCATGAGAACAGCACGGGAAAGACCCACCCCCATGATTCAACTACCTCCCACCGGGTCCCTCCCACAACACGTGGGAAGTATGGGAGCTACAATTCAAGATGAGATTTGGGTGGGGACACAGCCAAAATATATCAGGGTCTCACTGTGTTGCCCAGGCTGGTCTCGCAGTCCTGGGCTCAGGCAAACTTTTTCTTAAAGGACCAGATAGTTAATATTTTCGGCTTTGCAGGCCATACAGCCTCGATTGCTATTCAACACTGCTATTCTTGTGCAAAAGCAGCCATAGACAATGTGCAAATGAATGAGCATGGCTGTGTGCCAATAAAACTTTATTTCTAAATTTTTATTTATTTTTTGAGACAAGATCTTGCTGTTGTCCAGGCTGGAATGCAATAATGCAATCATAGTTTACTGCAGTCTTCTCCTCCTGGGCTCAAGTGATTCTCCCACCTCAGCCTCCCAAGTAGCCGGAACTACACGCACGTGCCATGACACCCAGCTAATTTAAAAAAAAAAAAAAATTGTTGGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCATTTTGAGAGGCCGAGGCGGGCAGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATAGTGAAACCCTGTCTCTACCAAAATTTTAAAAATTAGCCACGTGTGGTGGTGCACGCCTATAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAATCCAGGAGGTGGAGGTTGCAGTGAGCCGAGATCACACCACTGCACTCCAGCCTGGGTGACAAAGCAAGACTATGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGGGTTTTTGCAGAGACAGAGTCTCACTATGTTGCCCAGGCTGGTCTTAAACTCCTGGGCTCAAGCGACCCTCCTGCCTTGGCGTCCCAAAGTACTGAGATTATAGGCATGAGCCATTATTGTGCCCGGCCCCAGTAAAACTTTATTTACAAAAACAGGTGGAGGGCCAAATTTGGCCCACAGGATGTAAGTTGCTAAACTCTTATTCACTGTGTAACAGACACAGCCCTGCCTGTCATGTGGGGAATGGACACATGACCAGGCAGGGTGTACATTTTCTTGCCCTGGTGAGGAGTGGTTAGGGAGGCCTCACTGGAGGAGGGGGCATGAAGCCAGGATCTGACAGACAAGGGGGAATCAGGCAGGCAAAATGGGGAAGAACATTCCTGCCCAGGGGACAGCCTGTGGGAAGGTCCAGAGGTGCAGGAGAGGATATTGAGTTGAGGCCTCCCAGAAGCCACCTGCTCAGCCCTTATCTGCCCCCCATCCCCACTATAG
Seq C2 exon
GCACCTTCAAGATCCAGAAGACGAGGCTGCAGCGAGAGGGCTTTGACCCACGCCAGACCTCAGACCGGCTCTTCTTCCTGGACCTGAAGCAGGGCCACTACCTGCCCTTAAATGAGGCAGTCTACACTCGCATCTGCTCGGGCGCCTTCGCCCTCTGAAGCTGTTCCTCTACTGGCCACAAACTCTGGGCCTGGTGGGAGAGGCCAGCTTGAGCCAGACAGCGCTGCCCAGGGGTGGCCGCCTAGTACACACCCACCTGGCCGAGCTGTACCTGGCACGGCCCATCCTGGACTGAGAAACTGGAACCTCAGAGGAACCCGTGCCTCTCTGCTGCCTTGGTGCCCCTGTGTCTGCCTCCTCTCCCTGCTTTTCAGCCTCTGTCTCCTTCCATCCCTGTCCCTGTCTGGCCTTAACTCTTCCCTCTTTTTCTTTTCTTTCTTTCTTTCTTTTTTTTTTAAGATAGAGTCTCACTCTGCTGCCCGGGCTAGAGTGCAGTGGTGGGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGGTTCAAGTGATCCTCCCACCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCGCCACCACGTCCAGCTAATTTTTATATTTTTAGTAGAGACGGGGTTTCACCATGTTGGTCAGGTTGGTCTTGAACTCCTGACCTCAGGTGATCCGCTGGCCTCGGCCTCCCAGAGTGCTGGGATTATAGGCGTGAGCCTCTGGCCCGGCCTTTCCTTTTTCCTCTCCTCTCCTGCCGAGAGTGGAACACGCGTGTCCTGGGAGCTGCATCTTGTGTAGGGTCCAGCTGCTTTTGGGGACTGCAGGAATCATCTCCCCTGGGCCCTGGACTCGGACTGGGGCCTCCCCACCTCCCTCTCGGCTGTGCCTTACGGAGCCCCGATCCAGGCCTCCTGTGGCTGTTGGGTTCCAGATGCTGCAGCTCCATGTGACTTCCAAGCAGGCCCTCCGCCCTCCCTGCTGAATGGAGGAGCCGGGGGTCCCCCAGGCCAACTGGAAAATCTCCCAGGCTAGGCCAATTGCCTTTTGCACTTCCCCGTTCCTGTCACATTTCCCCAGCCCCACCTTCCCCTCCTGATGCCCTGAAAGCTTCCGGAATTGACTGTGACCACTTGGATGTCACCACTGTCAGCCCCTGCCTTGATGTCCCCATTTAGCCATCTCCATGGAGCTCCTGCTGGAGGGCCCTGAACCCTGCACTGCGTGGCTGCCCAGCCAGCTGCCTCCTGTCCTGGGAGGAGGCCTCCTGGGTGTCCTCATCTGGTGTGTCTACTGGAGGGTCCCACAGGAGAGGCAGCAGAGGGGTCAGGGGAGGTCTCCTGCCGGGGGTTGGCCTCTCAAGCCTCAGGGGTTCTAGCCTGTTGAATATACCCCACCTGGTGGTGGCCCCTCCGATGTCCCCACTGATGGCTCTGACACCGTGTTGGTGGCGATGTCCCAGACAATCCCACCAGGACGGCCCAGACATCCCTACTGGCTTCGCTGGTGGCTCATCTCGAACATCCACGCCAGCCTTTCTGGGGCCGGCCACCCAGGCCGCCTGTCCGTCTGTCCTCCCTCCAGCAGCACCCCCTGGCCCCTGGAGTGGTGGGGCCATGGCAAGAGACACCGTGGCGTCTCATGTGAACTTTCCTGGGCACTGTGGTTTTATTTCCTAATTGATTTAAGAAATAAACCTGAAGACCGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130304-SLC27A1:NM_198580:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF131931=AMP-binding_C=FE(64.5=100)
A:
NA
C2:
PF131931=AMP-binding_C=PD(3.9=5.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)