BtaINT0135170 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006957 | SLC2A8
Description
Bos taurus solute carrier family 2 (facilitated glucose transporter), member 8 (SLC2A8), mRNA. [Source:RefSeq mRNA;Acc:NM_201528]
Coordinates
chr11:98161885-98162508:+
Coord C1 exon
chr11:98161885-98162047
Coord A exon
chr11:98162048-98162301
Coord C2 exon
chr11:98162302-98162508
Length
254 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
3' ss Seq
GGCGGTCTCCCCGCCCCCAGGCC
3' ss Score
9.25
Exon sequences
Seq C1 exon
CGCTCCCCGCGGCCGCCGCGTCTTCCTCGCTGCCTTCGCCGCTGCCCTGGGACCGCTCAGCTTCGGCTTCGCCCTCGGCTACAGCTCCCCGGCCATCCCGAGCCTGAGGCGCGCCGCGCCCCCGGCCCCGCACCTCGACGAAGACGCAGCCTCCTGGTTCGGG
Seq A exon
GTGAGGCCTCGGGCTCACCCTCCTGCCCTCCTGGGACCCTACTTCGCCCACCCCTAAGACGTGTGCCAGGACCCTCCCCGCGCTGCCTGGCTTCGGGCGGGCACGGAGACCCTCCGCCGAGTATGTCCCGGCTCCCCTGAGAGGGGTCGCCCATCTCCCCTGCCCCCGCAGCGGCTGAGGGTGGGGTGGAGGGCGAGGTTGGGCCGCGGGCCCCCGGCGCCCCCTCCCTCAGCCGGCGGTCTCCCCGCCCCCAG
Seq C2 exon
GCCATCGTGACCCTGGGCGCCGCGGCCGGGGGCGTGCTGGGCGGCTGGCTCCTGGACCGCGCGGGGCGCAAGCTGAGCCTAGTCCTCTGCGCCTTGCCCTTCGTGGCCGGCTTCGCCGTCATCACCGCGGCTCAGAACCTGTGGATGCTGCTCGGAGGCCGCCTGCTCACCGGCCTGGCCTGCGGCATTGCCTCGCTCGTGGCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006957:ENSBTAT00000009144:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=PU(9.8=80.0)
A:
NA
C2:
PF0008319=Sugar_tr=FE(15.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTCCTCGCTGCCTTCG
R:
CAGCATCCACAGGTTCTGAGC
Band lengths:
294-548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development