HsaINT0152365 @ hg19
Intron Retention
Gene
ENSG00000136856 | SLC2A8
Description
solute carrier family 2 (facilitated glucose transporter), member 8 [Source:HGNC Symbol;Acc:13812]
Coordinates
chr9:130159655-130160390:+
Coord C1 exon
chr9:130159655-130159817
Coord A exon
chr9:130159818-130160183
Coord C2 exon
chr9:130160184-130160390
Length
366 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
3' ss Seq
CAGCAGCCGCCCGCCTCCAGGCT
3' ss Score
2.96
Exon sequences
Seq C1 exon
CGCGCCCCGCGGCCGCCGCGTCTTCCTCGCCGCCTTCGCCGCTGCCCTGGGCCCACTCAGCTTCGGCTTCGCGCTCGGCTACAGCTCCCCGGCCATCCCTAGCCTGCAGCGCGCCGCGCCCCCGGCCCCGCGCCTGGACGACGCCGCCGCCTCCTGGTTCGGG
Seq A exon
GTGAGGCCCCGGGCTCGCTCCTCCCGCCCTGGGACCCCACGCCCTCCTCTCGGGACGGGCATCGGGACCCTCCGCCCCCCACCCTTCCCCTCGGGACAGGCATCGGGCCCCGCCGCCACCACCTTTCCCCACGAGACAGGCATTGGGCCTCTCTGCCCCCCATCCCTTCCCTCGGGACGGGCATCGAGCCCCTCAGCCCCCACCCCTCCCCTCGGGACGAGCACCGGGCCCCTCAGCCCCCTACCCCTCCCCTCGGGACGGGCGCGGGGCCCCGGCTCTTTTACCTCTGAGCCCGCGGGGAGTGGGTGGAGGGGGAGGATGGGCTGCGGCTTCGGCGCCCCCTCCTCAGCAGCCGCCCGCCTCCAG
Seq C2 exon
GCTGTCGTGACCCTGGGTGCCGCGGCGGGGGGAGTGCTGGGCGGCTGGCTGGTGGACCGCGCCGGGCGCAAGCTGAGCCTCTTGCTGTGCTCCGTGCCCTTCGTGGCCGGCTTTGCCGTCATCACCGCGGCCCAGGACGTGTGGATGCTGCTGGGGGGCCGCCTCCTCACCGGCCTGGCCTGCGGTGTTGCCTCCCTAGTGGCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136856-SLC2A8:NM_014580:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=PU(13.3=80.0)
A:
NA
C2:
PF0008319=Sugar_tr=FE(20.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTCCTCGCCGCCTTC
R:
GCCACTAGGGAGGCAACAC
Band lengths:
347-713
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)