DreINT0150531 @ danRer10
Intron Retention
Gene
ENSDARG00000104278 | slc2a8
Description
solute carrier family 2 (facilitated glucose transporter), member 8 [Source:ZFIN;Acc:ZDB-GENE-030829-25]
Coordinates
chr5:65293751-65294272:+
Coord C1 exon
chr5:65293751-65293913
Coord A exon
chr5:65293914-65294065
Coord C2 exon
chr5:65294066-65294272
Length
152 bp
Sequences
Splice sites
5' ss Seq
GGGGTTTGT
5' ss Score
1.06
3' ss Seq
GCTGTTTTCCTGTCTTACAGTCT
3' ss Score
9.45
Exon sequences
Seq C1 exon
TAAAGTTAAGAATGGAAAGCTGTTCATCGCCACCTTCGCAGCAGTTCTGGGACCGCTTAGTTTTGGGTTCGTGCTGGGCTACAGCTCTCCTGCTATCCCTGAACTCCGCAGAATCCAAGACCTGAGACTGCAGCTCAGCGTAGAGGAAGCTTCCTGGTTCGGG
Seq A exon
GTTTGTGAATTATTTTTGGTCCAGATTTTGACAGCAATGTGACAATAGAGAAAGGTTATTCATTTTCAGTTCCCTAGAAAGGTTTTTAAAGGGGAACCGCAATTAAATGTTTAAAGGTGCCATTGTCAAAATGCTGTTTTCCTGTCTTACAG
Seq C2 exon
TCTGTGGTGACCATTGGTGCGGCTCTTGGGGGTCTTCTGGGAGGATGGATTGTGGAGAGGATCGGACGAAAGTTGAGCCTTATGTTCTGTGCAATACCATTCATCTTTGGGTTTACCACCATTATCGCTGCTCAGAACCACTGGATGTTCTATGTGGGCAGAGTGCTCACTGGTTTGGCCAGTGGAGTGACCTCTCTAGTTGTACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104278:ENSDART00000166432:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=PU(9.9=81.8)
A:
NA
C2:
PF0008319=Sugar_tr=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCTATCCCTGAACTCCG
R:
TGAGCACTCTGCCCACATAGA
Band lengths:
245-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]