BtaINT0135297 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001545 | SLC34A2
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 2 [Source:HGNC Symbol;Acc:HGNC:11020]
Coordinates
chr6:46738486-46739891:+
Coord C1 exon
chr6:46738486-46738629
Coord A exon
chr6:46738630-46739779
Coord C2 exon
chr6:46739780-46739891
Length
1150 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
TACTCTTTTCCACCCTCCAGTGC
3' ss Score
7.31
Exon sequences
Seq C1 exon
GAAAGGTAGCTGGGAAATTCTTCAACAACAACTCCATCATGTCTAATCCCGTGGCGGGGATGGTGATTGGGGTGCTGGTGACGGTCCTGGTGCAGAGTTCCAGCACCTCCACGTCCATCGTCGTCAGCATGGTGGCCTCCTCAC
Seq A exon
GTGAGTCCAGGCACCTGTGAGCCCAGATACATTTCAGGCATTTCCCTGTTCAGCTGGGGAGGCTGGGATTTACTCTGAGTATGTCCAGACTTGTTGCCATTACCTTCCTAACTTGTCCAATTATGATGTGCTCTGCTTAGATTGTGGGCAGCCTCCTGTTTCCCTTCCCAGGGCTGAGCCCCAGTGCTTGAAGACTCAGTTCCGAATTCTCTTGAAATGTGTTGTCTAGTCTAGTAGCCACTAGCTACATGTGGCTGTTTCATTTAACCTTAAATTCAGCTGCTCAGTGGCAAGGTGTATTTCAAGGGATCACATGTGGTTAATGGCTGTCATATTGAACCACATAAATTTAGAACGTGTCCATCATTGCTCTCAGGGCTTCATGTAATCACATCACGTGTTGGCCTTGAGGCATCTGAGCTTGGGCACCTGACGTTACAAACTTGAACCCACTCAACGTTTGCCCTGGCTATGTTGAGACAGACCCTCTGAGGGGAGCCAGTTTGAACTGATTAATTTTCAACCCAAACCAGTATTTTTATCTAAAATTTAGTAGAACAACTTTTCAAGGACCAAATTAGAAGAATATTCTTTACTTCTGCAAAGTATTTTTATACTTTTATAACTTATATTTTTTATACTTCTTAATACTTTTATAACATATACTTTTATATGTACTTTTATACTTTTATACATTAGAATGTATGACAATGTATTAATTTTGTGAGAAAAAGATATTGCCATAAACTTTCCATAATAAATACATAAGTCCTTATACATTGTTTCCTGGTCTCCTTTATGCTACCCTGCCATCTGGAATGGGGGGACAGAGGGATTTAGAATGGAACTTTTAAACTTTTAAACTGAAACTTTTAAACAGGAGGGTTTTGTGGAGTCTCTAAATTCCCTGCAATTAAGTGCTGAAATTTTTTATTTCCTTCTTTGGCATACGTGCCTATTTCTATAGTGAGATGCCCAAGTTTTGTTCAGATTCACAGTGGGGTGCAGACCCTAAAGAGATTAAGACCTGGTGCTTTAGGGGATTACCAGCCTGCATGAGGTCAGTTTGCCTTGGGCCACATCAGGAACACGGCCAAGATGCCTTCCTCAACTTTACTAACTTGCTAACTTACTCTTTTCCACCCTCCAG
Seq C2 exon
TGCTGCCCGTGCATGCTGCCATCCCCATTATCATGGGAGCCAACATTGGGACTTCAATTACCAACACCATCGTGGCGCTCATGCAGGCAGGAGATCGGAAAGAGTTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001545:ENSBTAT00000002023:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(34.3=100)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=FE(26.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTAGCTGGGAAATTCTTCAACA
R:
CTTCTGAACTCTTTCCGATCTCCTG
Band lengths:
254-1404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]