GgaINT0072509 @ galGal3
Intron Retention
Gene
ENSGALG00000014372 | Q6TQF9_CHICK
Description
NA
Coordinates
chr4:75893765-75894637:-
Coord C1 exon
chr4:75894494-75894637
Coord A exon
chr4:75893877-75894493
Coord C2 exon
chr4:75893765-75893876
Length
617 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
CTTCATTTTCTACTTTCTAGTGC
3' ss Score
7.23
Exon sequences
Seq C1 exon
GTAAAGCAGCAGGGGACATTTTTAAAGATGATTCAGTGCTCTCTAATCCTGTTGCGGGGCTGGTGATAGGAGTTCTGGTGACTGTGATGGTCCAGAGCTCCAGCACTTCTTCATCCATCATCGTCAGCATGGTGTCCTCTACAC
Seq A exon
GTAAGTCTGCTTGTAGTGCCTTCCTGGAGATCACCCACAAATCTTGGTGCAGCATACAATTGTTCCCACCTGTGCTGAAGTTGTAGAAGCATTGGATTTAAGAGTAGGGATTGCAGGAAAAGACTTTCACTGCTGTAGCCTTTGATATTAAAAAAAAAAAACAGAGAGAAAAAGTTAATGCGCTGCAGAAAACAGTGAAATAATGTTCATAACTGCAGTGAAAATCACTGAAAGTGTTGGCAGTGAATGCATTAACTTTGGAAGTATCCACATACCTTTCTTGTGTTAATCAGTTACCAAATTTTGTTTCTGGCAACATTTCAAAATTCTTCAGAAAGTGGGTTATGCCTAAGGAAGAAGAGGCGGTTGCTCTGTCCCTCTAATGTGTGATGAAAAGAGATAACAAGGGACTACAGTGGGGATCACTAGACTGTTGGAATGCCACCTTCCCAAGGGGCGTGATTAAAGCAAACATACCTGGATTGGAGGCCCTTATCCTAGTGACATTGAAGGAAGTCTGTCCCTGTGGTCTTAATATAGGTTAATTTTTACTGGACCAAATAGCTCACAGATTATCTCATTTTTTTTCATTGAATGCTTCATTTTCTACTTTCTAG
Seq C2 exon
TGCTGACTGTACAATCAGCTATTCCTATCATTATGGGGGCAAACATTGGCACCTCAGTTACAAACACAATTGTGGCGCTCATGCAAGCCGGGGACAGGAATGAATTTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014372:ENSGALT00000023222:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(34.3=100)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=FE(26.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAAGCAGCAGGGGACATTT
R:
TCTAAATTCATTCCTGTCCCCGG
Band lengths:
254-871
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]