MmuINT0146276 @ mm9
Intron Retention
Gene
ENSMUSG00000029188 | Slc34a2
Description
solute carrier family 34 (sodium phosphate), member 2 [Source:MGI Symbol;Acc:MGI:1342284]
Coordinates
chr5:53451999-53452715:+
Coord C1 exon
chr5:53451999-53452142
Coord A exon
chr5:53452143-53452603
Coord C2 exon
chr5:53452604-53452715
Length
461 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
TTCTTTTTTTTACCCTTCAGTGC
3' ss Score
9.41
Exon sequences
Seq C1 exon
GCAAAGTGGCCGGACAGTTCTTCAGCAACAACTCCATCATGTCTAATCCTGTGGCTGGACTGGTGATAGGGGTTCTGGTGACAGTCATGGTTCAAAGCTCCAGCACCTCTTCCTCCATCATCGTCAGCATGGTTGCTTCTTCAT
Seq A exon
GTGAGTTGGGGACTTGCTCTTGCTCTAGGCAGTGCTACTCCCCGCCCCAGGAAGTATTTTAGCCAAAGTTAATTACAATTTTTTTTCTACACAGCAAGTTTGAGGCCAGCCTAAGCTACATAACACACTATTTTGAAATGAATAAAATAAAAATGTGTCTTCAGACCTGGGGCTCAGCCATTCCTTTAATCACTGATTCCTGGCCTCCTGTGAGATGGGAGTACCAGAGAGGCTTTTGGGGGGGGGTCTTCTGGTACATGGGGTGCATGCAGATTCATCGACTCCCCTCTCTGGATTTTAATAGCTGTGTAGTGTTATATATGACACACCACCTCCCAAAGAAACTGAGACCTGCTTTCTAGAATATTTAGCCGCAGTGTGTTCATCCCACACTTGGGGTGTTGTGGAGCGTGGCTCCCCTGCCTGCAGGTTCCCTCACTGTTCTTTTTTTTACCCTTCAG
Seq C2 exon
TGCTGACGGTTCGGGCTGCCATCCCCATCATCATGGGCGCTAACATTGGAACCTCCATCACCAACACGATCGTGGCGCTTATGCAGGCAGGAGACAGAAATGAGTTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029188-Slc34a2:NM_011402:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(33.3=100)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=FE(25.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGTGGCCGGACAGTTCTT
R:
TTCTGAACTCATTTCTGTCTCCTGC
Band lengths:
254-715
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: