RnoINT0137616 @ rn6
Intron Retention
Gene
ENSRNOG00000004626 | Slc34a2
Description
solute carrier family 34 member 2 [Source:RGD Symbol;Acc:620889]
Coordinates
chr14:60265716-60266455:-
Coord C1 exon
chr14:60266312-60266455
Coord A exon
chr14:60265828-60266311
Coord C2 exon
chr14:60265716-60265827
Length
484 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
TCTTCTTTCTCACTCTTCAGTGC
3' ss Score
10.11
Exon sequences
Seq C1 exon
GAAAAATGGCCGGCCAGTTCTTCAGCAACAACTCCATTATGTCTAATCCTGTGGCTGGACTTGTGATAGGGGTGCTGGTGACAGTCATGGTGCAAAGCTCCAGCACGTCCTCGTCAATCATCGTCAGCATGGTTGCCTCCTCCT
Seq A exon
GTGAGTTCTGATGCATTACCTAGGGCGTGTCACAATTATCGTTCCATTTTTTCCCTCATGGCAGTATTTTAGCCAAAATTAATATTATTATTAGAATTTTTCTACAAAGTAAGTTTGAGGCCAGCCTAAGCTACACAACACAATGTTTTGAAATAAGTACATGTTTCTTCAGCTCCAGGACCCATCCATTCCCTGATCACTGGTTCCCTGGCTCACTAATTCACTAATCCCTGTGAGATGGGAGGACAGAGGGACTTTAGGGGGTCTAAAATTACACTAAAATTACATCCAAGAATGGGGTACATGCAGATTCATTGACTGCCCTCTCTGGATTTTGATAGTGTTATATATGACACACCACCTCCTAAAGAAACAGAACTTCGTTCTAGAATAATTAGCCATGGTTGTTCACGCAGCACATTGGTGTGTAGAGCATGGCTCCCCCACCTTGCAGGTCCCCTCACTCTTCTTTCTCACTCTTCAG
Seq C2 exon
TGCTGTCAGTCCGCGCTGCCATCCCCATCATCATGGGTGCTAACATCGGGACCTCCATCACCAACACGATTGTGGCACTTATGCAGGCAGGAGACAGAAATGAGTTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004626:ENSRNOT00000048509:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(33.3=100)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=FE(25.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGCCAGTTCTTCAGCAAC
R:
TTCTGAACTCATTTCTGTCTCCTGC
Band lengths:
246-730
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]