BtaINT0136057 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011226 | SLC4A2
Description
solute carrier family 4 (anion exchanger), member 2 [Source:HGNC Symbol;Acc:HGNC:11028]
Coordinates
chr4:114439867-114440423:+
Coord C1 exon
chr4:114439867-114440038
Coord A exon
chr4:114440039-114440181
Coord C2 exon
chr4:114440182-114440423
Length
143 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGG
5' ss Score
4.51
3' ss Seq
CAGTGCACCTGTCCCTGCAGACC
3' ss Score
8.31
Exon sequences
Seq C1 exon
CCAGAGCCTGAGAGCCTGGGCCCCGTGACTGCACCTGGCTTTGCAGCTGAGCAAGAGGAGGATGAACTCCACCGCACCCTGGGCGTGGAGCGGTTTGAGGAGATCCTTCAGGAGGCGGGGTCCCGAGGAGGGGAGGAGCTCGGCCGCAGCTACGGGGAGGAAGACTTTGAAT
Seq A exon
GTGAGGGGGTCGGGGGAGGCGAGTTGGGGGCTGACAGGGTGTTGCTCCGGGCTGGGGGCCTGGGGGCGGGGAGAGGCTGGGGGCCCGCCAGCTGGAGAGGGGGGAGCAGGGCCCATTGGCAGCCAGTGCACCTGTCCCTGCAG
Seq C2 exon
ACCATCGCCAGTCTTCCCATCACATCCACCACCCGCTGTCCACCCACCTGCCTCCTGACACCCGGCGCCGAAAGACACCCCAGGGCCCAGGGCGGAAGCCCCGCAGGCGCCCCGGAGCCTCCCCGACTGGGGAGACCCCCACCATCGAGGAGGGCGAGGAAGAGGAGGATGAGGCCAGTGAGGCCGAGGGGGCTCGGGCCCTCAGCCAGCCTTCGCCTGCCTCCACACCCTCTTCCGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011226:ENSBTAT00000014910:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGCGGTTTGAGGAGATC
R:
ATCCTCCTCTTCCTCGCCCTC
Band lengths:
258-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]