RnoINT0138461 @ rn6
Intron Retention
Gene
ENSRNOG00000014347 | Slc4a2
Description
solute carrier family 4 member 2 [Source:RGD Symbol;Acc:3711]
Coordinates
chr4:7276601-7277122:-
Coord C1 exon
chr4:7276957-7277122
Coord A exon
chr4:7276846-7276956
Coord C2 exon
chr4:7276601-7276845
Length
111 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGG
5' ss Score
4.51
3' ss Seq
CAAGCCTCTCCTCCCTGCAGACC
3' ss Score
10.51
Exon sequences
Seq C1 exon
CCAGAGCCAGAGAGCCTGAGCCCCGGAACACCTGGGTTCCCTGAGCAAGAGGAGGAAGATGAACTTCGTACCTTAGGTGTGGAGCGGTTCGAGGAGATCCTCCAGGAAGCTGGATCCAGAGGAGGAGAAGAGCCAGGCCGCAGCTATGGGGAGGAAGACTTTGAAT
Seq A exon
GTGAGGAGGCACACAGGGGAAGGGAGGCTGAGGGATCGGGTTAGACTGTCCTACAGAGAGAAGGCTGCGTAATAGTGGACCTGCCTGCAGTCAAGCCTCTCCTCCCTGCAG
Seq C2 exon
ACCACCGCCAGTCCTCCCACCATATCCATCATCCACTCTCCACCCACCTGCCTCCTGACGCCCGCCGTCGCAAGACTCCCCAGGGCCCAGGACGGAAACCTCGGAGGCGCCCTGGAGCCTCTCCCACTGGAGAGACCCCCACTATTGAGGAAGGGGAGGAAGATGAGGATGAAGTCGGTGAAGCTGAAGGGTTCAGAGCTCCCCCGCAACAACCATCTCCTGCCTCTTCACCCTCTGCAGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014347:ENSRNOT00000019666:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAAGCTGGATCCAGAGGA
R:
CCCTTCAGCTTCACCGACTTC
Band lengths:
255-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]