GgaINT0050296 @ galGal3
Intron Retention
Gene
ENSGALG00000011224 | SLC4A3
Description
NA
Coordinates
chr7:23609111-23612817:-
Coord C1 exon
chr7:23612661-23612817
Coord A exon
chr7:23609365-23612660
Coord C2 exon
chr7:23609111-23609364
Length
3296 bp
Sequences
Splice sites
5' ss Seq
AATGTATGT
5' ss Score
5.87
3' ss Seq
ACTCTCTTTTTCTCTCTCAGTCC
3' ss Score
10.6
Exon sequences
Seq C1 exon
GGCAGAGATCGTGCAGAAAAAGCCTCTCCTGGTGCCGAGGACGATGAGGACTTGGATAAGACTTTATCAATCGAGAGATTTGGGGACCTGATAAGCAAGTCAGCATCAAGCAATCTGGAGAAGCAGAGACGCTGCTACAGTGAGAGAGATTTTGAAT
Seq A exon
GTATGTAGGTTTGAACTATTGTACCCACATCCATTCCTAACCCTCGCTCAGCTCTATGTATTCTGCAGCCTTTTGCTGGGGACCCGCAAACCTTTTCTCCCTTTAGAGTGTTCCCAAAGTGCTGCTTACACTCAGCTGCCTTATGTCAGTCTGTCCCAGTGTCCCAGTTTCCTGGAGGTGTAGCTCCTGCTCACATGTAGCTCAGGTCACCTCCTCACCCGGTGTCAGGGACCTCTGCAGCCACCTCTGCAAGCTGAAGTTTCCACTTCAAAACTATTTTTCTTCCATATGGCTGCAAAGAAACATCCAAATATGGCTAGAAGCCAGGCTGTCCTCCCCAGTCTGAAAGCAGATGGTTCCAGTCAGACATGCCCATGTAGTTCTAAATAGCAGCCATGAAACCATCAGGCTTATCTGCTCAAAAAAGGATTGAAAATTAGAGATGAAGCACGAGTTTAAAATGCTGCAGCTATTTCACCTGGAATCCTCTGATCAGCATGTTCATTCCTCTAATTGCCCTTCCATGAAGAAGGCAACAGTCAGAGTCACTTTGGCTGTAGAATGAGAGTGTGCCCACAAGAGCAGTCATAAGCTATTGCCTGCTGTAGATGGTCGCAGTAGGTTGTAGTAGTGGTGGTAATGGGCAGGAAGAGCCCCCCAGCCAGCGGGCTGGCGTGTGGCAGACAAGTAGCAATGGTTGGGTGAGTTTCCCAGTCTCTGGCTCTGTGCAGTCAGATACTGCTTATTTCCCAGCGTAGCTTTGATAGGATACAACCTTAGGAACATTTTGTTCTAAGTACATCACCAGGCTGTTTTCTGCTTGGCCACTCATTTCCAATTGGTGTTGCAAAAGTTTGCTAGCAATATTCAATTACTGTAATGCACTCCAGCTGCTACTTTCTGCTTGTGCCATCTCTCTACGGAGGCTACATTCAAACAGCACTTTCCACCTGAGCACAGTCACTCACACTCGTGGCTGCAGGGTGCTCATCGCTTTGCTGCGGGTTGGATACCTGTACTGTGCTGGCAGTACTTACCTGCTCAGAGCTCTGTGTGTGCACAGGTGTGTGAGCTGGCGCAGAGCATGCAGATGATCTGCTTCAGCATGCATGGCAGAAGCTTCTTGGAAAATTTGCCTAGAGATTTGTGCTTTGTTAGTTTTGGGTTGTTTTGTTTTTTTCTTAAATAGAAGAGTTTTTCTCTCCTTGTTAGAATCTAGCTTGTTTTCCTTTGAGTTCCTGATGTAACCCTGTTATCTAGGGCTAGGACTGTGTCAAACTGCGGCTCTCAGAAATTTTATTCAGCATGTATTCCTGAAGCTGAAAGTTCTGGTAGGGTAGTAGACTTTGAAAGATATTCTACGGGCTCGTGGAGTGAATGCTCTCTGGTTTTAAAAATGTCTCCTGCCCCATTCACAACCAGGAACTACTTATATGTGGGTTCTTTCTTCTGGACTCCCTATCCAAATTACTTTTTCATACCTTTTATTCACTGGAAAGTGTAATCAGATGCTGGTTTGGCCATAGCTTTCTATTCAGACAGGTGATGCAAGGAAGGGCTTGGGCAAGGAGAGTAGAGGCTGGGTGCACAGAAGCTGCTGAAGGATGGGGAGGAAGAAGATGGAAGAACAATGTGTTCTGTGCTAGGGAGAGGTGTATTTTTCCCCCCTTCAGCCTTCCTTTGTGGGAGAAGTGATCAGCTGGCAGAAGTGCTGAGGTAAAGGGTGGTGCTGCTCTGTTCTGTGCCAGACCAGCCACTTGCCATCGCTGCACTTCCCTGCAGCCTGAGGCTTGGGCTCTCTGCTGGTCCAAAATGCAGACGTTTCTGTCTTGGCCTGATGCAAACAGCCCAGAAGTGAGAGCTGGGCTGTGACTTCAGCACCAGCTTTGTGCACTGCTGGGGCCTTACTTGCTTTTTACTGCATGAGGAATTGATGCCTGACCTATCCATGGCAGGCGGAGCAGTGCTCGGGGAGTGCAGAACAGGAGTGCCTTTCTGCCCAAACCTCTCTATTCAAAGCAAATAACCGAAGAGCACTTTGGATGAACAAGTGTTCATTAAGAGCCTGAAGTTCCCATTTTGCATTTGTCTGACCATTCCCAACCTCTTCTAATTCTTGCCACAAGGCTGAACCAAGGGGGTGTGTGAAATATTCCTGCTGTTCCCAAGGGGGGAAACAAGGGAGAAAAGACTTGAGAAACCAAAGGAAAGGAAACATGACACCAGAACAATGAACCTGCCTGGCTCTCCCAGGGAGAAGGTTACAGCTTCCATTGAAAATGTCCTTTGAAGGTAGTTTTCACTATAAACAGATTTTGCTGCCATGTCACAGGAAAGCTGGGAAGGAACCAAATCAAAACAGGCTGGAAACAATTCCTCAGGAAGAGCTGCTGAGCAAAGCCCCCTTGCAAAGCGACTGGTGCCCCCGGCATTTTAGCTGCTCCGGGTGCAGCCCCAGGGGCCGTGCATCCTGCAGGCTGCATCTGGGAGGCTTTGTGCCTGCAGATAGACCAGGCAGAAGTGGCTTTCCCATGTCTTGCTGGGAGATGCCGAGCTTACCCTGCTCCCCGCATGGTGCATTGACATTGGTTTTGAGTGATGGCTCAGAAATGCCATTAATTTCATCTCGTTGTGTAATTCCCACGACACCCAGGTCAACTCCGTATGAATTTCTCTTTGTGGATTAGTTTGAAGAAAAGTCCTTCTGCCCTGTTTTTTACCCTGGTTTTTAAAGAGAGCCTCCTAACTGAGCCTGCATTTCAGAGGCTGGTACCTCACAGAACCTGAGACGTGAATTTATGTTGCATCTGCACTAAAAGTCTCGGTCTGTGATTCCTGTCCAAGCCCGTGAGTGAAATAAGGCACATCTATTTAAGTCCAACTAAAGAACACTATGCAGGAAAGAAATGTTTGTAAATGACCCAAACGCTGCTTGTTTGAGAATGTGAGAAGTATTTCCCCATGTTTAGGAAGGGGGTGTTGTCTCTGGCAGGTCCCTGCAGCTCTGCACAGCTGTGTGAATGGCTTTCAGCAGCCTCAGAAGAGCCCTGTCTTGCCCAGGGTGGCAAAGCAATGTTGGGGTGGTTTGGCACTGCACGAGGGCTGCCTCCTCAGCCACTTCAGGCTGACCACAGCCTGCCACATCATTGGAAGAGCTTTGCTGTGTCCCTGTGGGCTGGTGGCTCTCCTTGCCCTTCCTGGCCCTTGATCTCCAGACCATGCTGTTTCCTGGAGGGGCGCCTGGCAGGTTCCTCCCAGCCTCTTCCTGCCCCTCTGACTCTCTTTTTCTCTCTCAG
Seq C2 exon
TCCACCGCCAAACCTCGCACCACATCCATCATCCCCTTTCCACTCACCTCCCTTCTGCCCTCAAGTTCCAAAAGAGGCCCCCCCGTGCCGGCAGGAGGAAAAAAAGAAGAAGGAAAAAGAAGAAAACCTCAGTACCCCCCTCAGAGGTCACCCCTACCATCCAAGAAGTGGACGAGGAAGGAGGAGAAGAGGAGGAAGAAGAGGAAGAAGAAGAAGAGGAGGAAGAAGGAGAGTCTGAGACAGAGGAAGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011224:ENSGALT00000018302:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF039858=Paf1=PU(3.4=7.5)
A:
NA
C2:
PF039858=Paf1=FE(72.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]