BtaINT0136078 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014975 | SLC4A3
Description
solute carrier family 4 (anion exchanger), member 3 [Source:HGNC Symbol;Acc:HGNC:11029]
Coordinates
chr2:108273518-108274541:+
Coord C1 exon
chr2:108273518-108273680
Coord A exon
chr2:108273681-108274266
Coord C2 exon
chr2:108274267-108274541
Length
586 bp
Sequences
Splice sites
5' ss Seq
AGTGTGGGT
5' ss Score
0.29
3' ss Seq
CGGCTCTCCTGCACCCCCAGTTC
3' ss Score
6.6
Exon sequences
Seq C1 exon
GTCCGGGTGCCCTTGGAGGAGCCACCTCTGAGTCCAGACATGGAGGAGGATGATGACTTGGGCAAGACCTTGGCTGTGAGCAGGTTTGGGGACCTCATCAGCAAGCCCCCGGCCTGGGACCCCGAGAAGCCCAGCCGCAGCTACAGCGAGCGGGACTTTGAGT
Seq A exon
GTGGGTAGCCCGGGGACCCCTAGTGTGGCCGCCCTCACCACCATCACCTTCATTTGCCACCATCACCGTGCTCACCACTGGCTGGGTCACCCAGGGCCATCTTATGCTGGACGCTGCGCTGGGCCACCACGCCGTGTTAAGTCATCCTGCCTCACTCACCCATCACCTGTCTGCCTGCCAGGGGAGCTGGGCCCCAGACACAGGGGAGATGTAGGGAGATGGGCCGGAGGCCGCTCTTGGTGACCTTCATCTTCCTCAAGGCTCTGTCCTTCCTCTGGCCCTGCCCTTTCCTCTCGGCCACCTCTCCTCCCCTCTTTGTTTCGGCTGACTCCACCTTTACCTTCCTTGCTGTATCCTGGCCTCTCATACCCCCATCTTCCCCTCTCCATCACTCCATCCCCCCCTCTACCAGGCCTTACCCATGACAGGCTGTGGATACAGGTGTTGGGGGGAGCCTGACTCTGGAGGAAGGACCAGGGTGCCCTTCTTTGTGGCCTTGAGCTAGAATAATAAGGTGTGTGCCCCTAGGGTGGTGAGGGGCCCCCTTCTGCTGTGGGGGCCCCAACCGGCTCTCCTGCACCCCCAG
Seq C2 exon
TTCACCGACACACATCCCACCACACCCACCACCCGCTCTCGGCGCGCCTGCCTCCACCCCACAAGCTGCGGCGACTGCCCCCCACCTCTGCTCGGCAGACCAGGAGGAAGAGGAAGAAGGAGAAAACCTCTGCTCCCCCCTCCGAGGGGACTCCTCCCATCCAGGAGGAGGGGGGAGCCGGAGTGGACGAGGAGGAGGAGGAAGAGGAAGAAGAGGGGGAATCTGAGGCTGAACCTGCAGAGCCCCCACCCCCAGGGTCCCCAACAAAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014975:ENSBTAT00000019936:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.891 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGATGATGACTTGGGCA
R:
GCAGGTTCAGCCTCAGATTCC
Band lengths:
358-944
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]