DreINT0151511 @ danRer10
Intron Retention
Gene
ENSDARG00000028173 | slc4a2a
Description
solute carrier family 4 (anion exchanger), member 2a [Source:ZFIN;Acc:ZDB-GENE-051101-2]
Coordinates
chr2:32443544-32447694:-
Coord C1 exon
chr2:32447538-32447694
Coord A exon
chr2:32443801-32447537
Coord C2 exon
chr2:32443544-32443800
Length
3737 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGA
5' ss Score
4.57
3' ss Seq
CTCTGTTTGTGTTTTTTTAGATC
3' ss Score
11.33
Exon sequences
Seq C1 exon
CCTATTGCAGTGCAGCCTCCCCCTCAGCGATGTGATGATGAAGATGAAGGGGATTTAAATAAGACACTGGGAGTCCAGCGTTTCCAGCAGATCCTCACACCGCCTCAGCGCCTGCCCACCGAACAACACCGCACTTTTAACGAGGAGGACTTTGAGT
Seq A exon
GTAAGAGCCTCACCCCTGATGCTGTGAAATGCATTAAAATTAACGTTAAAATGGAAATGTTCAAAACATTGCAGCTTACAGTAATATAATATAAATATGGTCATAATTAATCAAGAGCAAATCATATACTCTGAAACGGCATGTTATGGTTTTTAATGCGCACTGCTCATCTATATATATCTGAATATCTGAATTATTAGACTGCTTGTTTATTTTTTCCCCAATTTCGAGTAAAAATATAGCTTAAAGGGGCTAATAATTTAGCCCCTAAAATGGTGTTTAAAGATTTTTAAACTTTTTTTGCTCTGTTAAACATCAAAAACAAGAAAACAAGAAAAAAAATCAAAGGGGGCTAATAATTCTGACTTCAACTGTATATATATATATATATATATATATATATATATAAAAGCAAAAATGTAAATAAATATTAAGCTGTATAATGTTTCTTGTTTTTCTATTTCAAATTTTAGGCCTCTTAACAATTATATTTATACAATTTAAGATATTAAAGACTTTTTTATGACCTAAAAATTCATAAAACCAGGGCACATTTTGTAATTGCAATCATTCCCATAAATGTGTTTTACAGATCACTCCCACCTCTTTTTATTTGTAAATGTGAGTGCTCTGTTTATATTTAAATTCAGGGTAAAAATGCTGACTATGGATGTTAAAACTTTAAAGCAAAAAACATAATTCATTCACTGATACAAGGTTAATATACAAGCCTGTAGAAAATACTAATAGCAGTTTTATTCACTCATAATACACCGAAAACCATCCAAAAACAGGTGCTGAAGAGAAAGTCACGTCATGAATTAAACCTCATTTAATTAAATTAAATTCATTTTGATTTCTATAGTGCTTTTGCAATGTAAATTGTGCCAAGGCAGCTTAACATAGAGGTTCTAGTTAATTATATTTGAAACTGTGTCTGTCCAATTTTCAGTTGTAGTAGTTCAGTAAAGTGTGGTTTAATTTTCACTGCTGAAAGTCCAAACACTGAAGAGCAAATCCATCGATGCACAGCTCCACAATTCCCAAACCAAGCAAGCCATTTGCAACATTGGCATCACGAATAGCTTTTCCAATAGCTGAGAAAATACATACTGACTTATAGAACGTGCACTGCACCATGTATAAACATTTTATTGAACAACATCAAATGTAACCTAAAGCCCAACTATGTATATAACTCGTAAGAAAAAAGCTACAAAGAAACAGTTATTTTATAGTTATTTCCCTCAAATATAGTAATGCACTCAACATACACTCTCCCTCAAGTTGCTTCAAACATTGAGTTTCTTTATCCTTTTAAACACAAAAAAGGTATGTTAAATAGTGTTTGGATACCTGTAGCCATTAACTTCTAAAATAAAAATAAAAATATAATGGAAGAACATTCTTCACAAAATTATAATTTAAATTCAACTGAAAAAAGAAACTCTTGTTTGTGAGGAATGCTGTAAATGTTAGAATTTTCATTTTTGGGTGGACTGTCACTTTAAGTGTCATGCAGGAAATTCTGGGAATGTCAATTGACACTTTTTCACTGTACACTGTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATAACCTCTATTTTACCAGGAAAAACACATTGAGATTAAAAATCTCTTTTACAAGAGTGTCTGGCCAAGATTAGGCAGCATACATGTCACAAAACAATTGACAGTTAACATGAATCAGACACTGACACACAACTATTCAAAACATCTACAAGCCAGTGTTTCAATTTCTAAATCATTTATACTCTTTTTTTTTTTTTTAAAGCATTTAGTCAATTTTCATCAATTCTTTAAACTGCAACTTATTCCATGCAAAAGGTGCTGCGTATTTAAAAGCCTGTGACCGAAGGCTATAGTTAAGGACAGGCTTTTTACAAATGTAACTCTGTAGATATGATGGTAGTAAACACAGTATAGATTTGTAAACAAGGATATGCCAATGCTTGAGCCTACAAATGGACAAAGCAAACCAACCTACCCTAGACTCTGAGACGAAGCATGCATATAGATCACCGAAGTCCAATATCGACATAAATGTTGCATCAACCAGCTTCTTTTTAGTATCATAAGAAAGGCAGTTCTTAATTCTAAAATAGAAGCCTAAAATCACTTTTCATTTTTTTCCAATCATTTTTTTTCACCAATTGCTGAATGTGAGAACTAAAGCAAAGTGTATCATCAATTCAAATTCAAAGATATTTGTACTGGGATACCAATTCAATCTCTGCATCATAAGTAATAGTAACAGAACCTAGCTTTTTCTCAGTTTGATTTGAATTTGACAATAGCATAAATTTTGTTTTATCTGCATTTAAAACTAGTTTTAACTCAGATAAATGATGTTGAAGTACATTAAAGGGGTGTAGTATATGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGTAAAAAGAAGAGGCCCCAGTACTGAACCCTGTGGAACTCCTTTAGTTACTGTAGAAATATCCATAAATAGTTTTCAGTATTTTGAGATTTAGTTTTTTTTTCCCCCATTTATTTATACTTTTGAATTGCATTATGGGACCTTGATCTTTCTTCCAACAACTTTTAACCTTGAAAAGTTTGAAAAAGTGACATTTAATAAAATTTAGTAGTTTATATATATAATAGTTTAAGGTGTAATATTTTCTGGGTTGGATGTTGTTATGTGTGAATATATGTTGAATATTATGGTACTAAAACTATGTATTGAACTGCTAGTACATTTTCTGTTGTTTTACAGACTTATTTCTCTATATATTATTAGTTATACATTATAATATTTCAAACTACTAAAATGTCAATAATAGTCACTTTGTTAAGCTGTAAAGTTGAGTTTTCAACATTTAAAGTGGATAAATCAATGTCCCATAATGCAATTCACAACCGTAAATAAACGAAAAACACTTGTGAAACTATGGAAACTTTATTAACAGATATTTTTTGACAGTGTAATCAAGAAACTTTAAGTTCATTAATTAACAAGTTTGTACCGTAGCCATTTTATGCTCTTTTAGCATTATAATTACTGTATTTTTTTCCAAGTATTAAATGCTTGCAGTGTTGGTCTTCATACTGAGGCCTCGTTTACACTAATACGTTTTAATTTGAAAATGCATACGTTTTTTCTACGGTTACACCATCCGTCCAAACTACGCCGGAGTTTGAAGAACGCTGCTGCTCCATCTCAGTGTGGATGGAGAAAAACGGAGACACCTGAAAACGGAGGCGGAGCTGCCGACACTCGCCTCTCTGACTGGGGCTTTTCCTCAATATTAAGTAGCCTACACATAGTTAAGTTTTGCATCCACTCCTTGTAAGTTCAGACTTCGCAAGTTTGATATGGAAAACAGACTCCCGAGGACATCAATCATCAAAGGGAACAGTGTACTTTATAACCCTATTCACATCACCCTGGCTACATTTTTTCACTTTCTTAACAATAAAATAAAAACTCGAAGGAACTGCTATTTTCATTTTGTTATTAACAACTTAACAGACAGCAGAAATGTTGAGGCTATTTTAAACTAAAACGCACTAGTGTAAAGGGGGCCTGAATCTCGACTAATTAAGCTCTGTTTGTGTTTTTTTAG
Seq C2 exon
ATCATCGTCACACCTCTCTGCACATCCACCACCCTCTGTCTAAACACCTCCCTGATGGCCGAAGGAAGAAACCCGGGAGGAAGAGGAAGGACTCAGGTCGGAGGAGGAGTTCATCCATGGGAGCAGCTCCGCCAATAGATGAGGATGATGAGGATGAAGAAGCGGATGAGGATTCCTGCAGCCAGCAGGACAGAGAGGGCAATGTCACCACTACACCTACACCAGACACAGACACAGAGGACAGAGAGCGGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028173:ENSDART00000041319:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]