BtaINT0136118 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004884 | SLC4A5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr11:10377321-10382020:+
Coord C1 exon
chr11:10377321-10377592
Coord A exon
chr11:10377593-10381961
Coord C2 exon
chr11:10381962-10382020
Length
4369 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACC
5' ss Score
6.54
3' ss Seq
TGCCCTTTGCTCATCCGCAGCGA
3' ss Score
10.01
Exon sequences
Seq C1 exon
AGGCAATGGCCTGGACTACATGGAGTTCCGCCTCTGGATTGGCCTGCACTCGGCCGTCCAGTGCCTTATCCTGGTGGCCACAGATGCCAGCTTTGTCATCAAGTATATCACCCGCTTCACTGAGGAGGGTTTCTCCACCCTCATCAGCTTCATCTTCATCTATGATGCCATCAAGAAGATGATTGGTACCTTCAAGTACTACCCCATCAACATGAACTTTAAGCCTGACTCCATCACCACCTACAAATGCGAATGCGTCGCCCCTGACACAG
Seq A exon
GTGACCGGTAACCCCAGAGGTGCCCTGGGCCCTCACCCATCACCCACTCCCCCCACCCACTCCCCCCACAACATCCAGACCCCTTCTGCCCCGTTTCTCTACTCAGATGCAGGAGAGTGAGGCAGTTGGGAGGGGCAGTTCAGCCAAGGGCTTTCTGTCCCAAGGGAGCAAGTACAGGGGCTTAAACCAGTTTTTGGAAGGAATCCAAGGGGACAAGAGCTCTAATGAGGGTCAAAATCCCAGAGCCCAGGGTTATAATTAGGAGGGAGCAGTGACAGTGATACCCCGGGAGACGAAGAAGGCATGCTTGGCCTCAGCGTGGGGTGATGTGCAGACTACATCTGTCAGGAGTGCTGCTCAGGGGTTCCTGCGTCAGGCCAGAGGTAGACTTGATGGGACCTCAAGTCCCTCCAAGTTACATGAGTTCATGACGCCGTGAGCTCTCCCTGACACATCTCTGCCAGTGTTTACAGCCGAAGGGTGAACATCCCTGCAGATGGTGACATGTCCAGGGTAGAGGGCCAGTCAGGGTGAGGAGAGCCTGGTAACCATGTCACTAAAGAATGATTGGAGAACCTGGGGTTAACCAGATCTTAGAGTGGTATGAGAGAAGGACTGTCATGTCACAGAGGGGCCAGATTCACCCTGTGTAACTATAAGATGCAGAAGGAAGGCTGAGGAACGAAAGCTCCAGGAAGCCAAATGCTGGCTGAATTCAAGGTATAACTTACAGTGGTGGGAGCCACCCCCCTGAGAGGTACGGGTCCCCTCGGTGGTAGCAAACTGCTTGGACACTACCTGGATATCCATCTGCCAAAGGTATCTTAGAAAGGACCCCCGCTCTGGGTGGGAGGCTAAATCAACCAACGTCAGGCCGATAATACTCAGTGCCACTCCTGTGAAGGTCCTTCTGACCAAAAAAAGCATCATCTGTAATGTTAGGACTATCCGTCGGTGAACCACTGGCCTCCTTCATAGTCATAATCACGCCCCTAGGAGCCCTCAGAGGGATGCACCCAGAGTGCCCAGGATGCTATAGAGCAGAGCCTAGAGGGACATCCACGTATCTCCTAGCACCACCAGGCTGGACTCACAGAGCAAACTGAGGTCCAGAGACACCCAAGGTCACACCAGTTTCTTAGCTGTAAAAGACGGGTATCAGTGCTGCTGGTCTCATGGGATGCTTGTGACGTTTTCATATCTATACTCAGATTGGGTGGGAATTGCACATAAGTAGACACTGTGTTGTTTAGCACCTTAATACATATGATTGATTAAAAATAATTGATCATAAGTCAGCCAAAATATTTGTTGCACAATTACCATGCACTCTACTTTTGGCTAGGCCTTATAAAGTTTTCTGAGCTCAGAGAATGTCATTTTGGTTGTACACTCTCACCCTCTGTCACTGCACTGAATTTGTAAAGATGTCTAGACCTAATTTTTTCTTTTTTTTCACTATCATTAATTTTGAGGTATTTCATTAAAATCCAGCAGTAGGTAAAGCTGTCCTTCATCCTGATCCAGGGCATGTTGCTTGCCCAGGAGACTGAGGAGATCCTACCTGCTGGCTCTTGTCCTCATACCCTAGAGTAAATCCCGCCTCTGTGGGCCAAGCCCCACTGGGGTGCTTTCATTTTCTGCTCACACCCTTTGAACTACAGATCCATTGCATTAAACACACGTTCCCACAAACATGGCTTTTAGTACTACACATGATTGATTTCTTTCAGAAATAGTCCAAATTCTGAGGTCATATGAACATTCTGGGAACCATCTATCCACAGGAGAAACCAAATATAGGGGTTCCCTAGGAACAGGGGACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACAGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTCGGACACGACTGAAGCGACTTAGCAGCAGCAGGAACAGGGGATGTAAGCCTGAAAGGACATATAAAGTAGGATTTGAGAACCATTATCGAATCCACCTAACTCCAAATAGCATCTGGCCTGGCCTGGCCCAGGTCCCTAATGTCACTGCATTTTTTTGGGTCATGCTATTGCCTTGGTTCTCAAAGTTGGTCCCTAGAAGCATCATCAATACTATCTGGGAACTTGTTAGGAATGCAGATTCTCAGGCACCACCCCAGACCTGCTGAATCAGAAACTGGGGGTAGGTAGAGCCAGTTGTATACTAACAAGCCTTCTGGGTGAGTCTCACGCTGAAGTTTGAGAACCACAGCTCTATTAAACCAAATCATTATTAGCAACTAGCCCTAGTGAGATGAGGTTTTCAGTTTCCTCATGAAAAGGAAAGGAACAGGAAACAGGACGAGCTAGTTTTGATTAGGAGAATATGAAGGAAGATTCTAGATGTTTAGCAGGCTGGAGTGAGGGAGCTAACTAGGATGGTTTCTTTCCCAGTCCACGGGCCACTCATTTTCCAACAGTTCCATAATCCTAGTGTTACTGCAAAACCCAGTTTGACCATGGCACTCTCACTCTATTGGAAGAGCTTGTTTGGGGGCACTCTTTTTAATTGAATCTTGTTTCCATTGTAACTGATTTGTATTCTATTTATGGATGCTGCATACACTGACTTGGCTGCTTTCAATCCCAAGTGAGTACCACTTTGTAAACACTAGAATTTAAAACTAGTTGATAGTTGGACCTTTTCTGGGATTATCCATGTTATAGTTCTTCCTTCATCTCCAAGTGGCTTTCAAATAAACCTTACATTGTTCTCAATATCGAAGAACGATAAAGCCTAAGCAGAAGACATCCAAGGAAAATCTGGTCTGACAACTTGGGCAACTGAACGGCGCTGCGCTCCCCAGCTCAGGTGGTAGCTGGGAGTCCTGTGGCATCTGTGCGTGTAGCCCTGAGTCAGCCGTGCTGCCTGCCTTCTCTGCTCCGCTGTTAACTGTGCATCATGTTCTTTTGGTCGGTTGTGTGAGAAAAGGCAGCAGCTGTCCTCGATTTCTCTTCAGAATAATTGTAACAAACCTCTGGGTTTGTAGAACGTCTCAAAATATTCTGCTATGGGTCAAGACTGAATTCCTTAGCCACTCCCAGCCCCAAATGCCCAAGTATGGGCCGCATTAAAGGGTCCTTGATCACATCCACCCCATGACAGTTTATTGGAGGTTGCAGGATGCTTCAAGAATAGCCTCTTCTTCCCTCTGGGTTCCTAACCAGAGCTAGAAGGAGCCAAATGGGGCATATGATGGATTTCAGGTCATTGCCAGCCAGCTGGCTAGGCCTCCTTCCTTCCTGCTCAAGTCAGCCACAGAGGAAGAGCTGAGTCAGCCTTCATTTGGAAGGCAAGGAGGCTCCGGCCCTGCTCCTTCACTGGTGCAGTGCAGGAGCAAGAGAGATGGCAACAAGCAGCCCTCTGAAGCTGCCTTTTAATAAATGGCTGCATCCCCCAGGGACAGGGGTTATAGTTCCTCTCAACTCATCTCCTGGCCCCTGAAAGGAACCCTCCTCTGCTCCACTCACTCAGGGACACTGAGGCTGGGGCATGGGAGCGTGGACAAGGGATCCAGAGTGAAGGCTGAGAGAAGCACCTCTGGGGACCAGATTCTCCTTCAGGTCCTGGACCCAGCTTTAATTTTCCTCAGCAAGCACTTAAGGGGAAGATTAGGAAAGATATCGAACAAGTTCTTGCAGGCCCAGCTGACCTAAAAAACCAAAACAAAACACATATGGAGAGCACAGAAGAGAAGGGAAGTGTAATTTGAAAGGGAGCAGAGAAGGAAAGGAAGCTCGCTGTTTAGAGCTGGGAGGTGTGTCGGCTCCAGCCAGCCTGTCTGGGATAGATAGTGGCTCCCTCAAGTAGGAGTTGTGTGACCTTGGGCAAAGGGCAGGTTACTTCGCCTCTCTGGGCCTCAGTTACCTCATCCTTAAAATGGGGAGATTTCTTGGGGATTTAGGAACTTAGCAAATGATGTGTTTAAGCGTTTGGCATAACGCATGGCAAAGGGTAAGTTCTTTGAAAATGTTTTTTACAGTCTAAGAGCAGAGACATTGGTCAGGTGAGTGGTAGGGTTTCATAAGGCACATTATTTACCCACTTGTGTTAGAGTTTTGTCTTGGCAGCAGTTTTTAAAGCCAGTCCTTTGAGATCAGACAGGATCTGTCCTATCCTGATGCAGCTAGTCTATCAGAACTGTGGCCTAGGGTCCCTCACCAGGCAAAGTGAGAAGAGTGAAGCGGGGCAGCTACCCTCACAGTGAAAACCAGTCTTTAGCCCTAAGGAACCGGAAGGAAATATGAAAGGGCGGGGCCCGGGGTGGGGTGCAAGCTCCCCACCCCGCAGTTGATGACCCTTCCCCATGCCCTTTGCTCATCCGCAG
Seq C2 exon
CGAATACAACCCTGTTCAATGCTTCAGCCACGCTGCCACCAAATACCAACACTTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004884:ENSBTAT00000006425:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(16.9=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(3.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development