RnoINT0138521 @ rn6
Intron Retention
Gene
ENSRNOG00000010378 | Slc4a5
Description
solute carrier family 4 member 5 [Source:RGD Symbol;Acc:1303009]
Coordinates
chr4:114969475-114973940:+
Coord C1 exon
chr4:114969475-114969746
Coord A exon
chr4:114969747-114973881
Coord C2 exon
chr4:114973882-114973940
Length
4135 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTC
5' ss Score
5.3
3' ss Seq
ATCTTCTGTGTCTTCTCTAGTGA
3' ss Score
9.98
Exon sequences
Seq C1 exon
GGCCAATGGCCTGGACTACATGGAGTTCCGCCTCTGGATTGGTCTTCACTCAGCCATCCAATGCCTTATCCTGGTGGCCACAGATGCCAGCTTTATCATCAAGTATATCACCCGCTTCACCGAAGAGGGCTTCTCCACCCTCATCAGTTTCATCTTCATCTACGACGCCATCAAAAAGATGATTGGTGCCTTCAAATACTATCCCATTAACACGGACTTCAAGCCCGACTCCATCACCACCTACAAATGCGAGTGCGTCGCTCCTGACACAG
Seq A exon
GTAGTCCCCGAAGGGTCCCCAGCCACCCTCCCACTCCTTCCATCGCAGCTCCCAGCGCAGGAGAGGAGCTCATTTGGACGGGTTCCATAGCCTGGTGCTCACTATTCCAAGGGAGCAAATGCTGGGTCTTTGTTTCTTTACTGAAGCAGGGTCTGTCTGTGTAACCCAGACTAGCTTTGGGATTCACAATGCTAATTGCAGGCTCTTGGAGCTAATTTTTGGAAAGAATCTGAGAGGTTGATAGTTCTAACCAAAGCCGCAACATGATTGTGGGGGGAAAAACATCCCGGGGTTGTAATCAGGAGGCCTCAGAGATACTTCCGGAAGGAGCAAGGCATGAGTGCAGCTTCTGAGGAAGATACACCTTGTTAGTAGCACAGCCCAAGTTAAGTGTGAGCTCGTGGCCCCTCACAGCGCCTGACAGCTTGCCTCGACATACCAAGACGGTCACAAGTCTTATAAAGTGAGACCACCCCAGAGGGAAAGTCACCCCTGCAGTCATGGTGGAGGCCTGTTGGAGGAGTTGGGGAAGCTGGCATCATTCAGCCTCCTAGGTGTGTGAGCGGGTTGGGAGGACTGCCATGTCTCAAAGGACCATATCTACCCTCTGTGACCACAGAATGTGGAATGAGGAGAAGCTTCAAGAAGCCAGATACTGCTGGGTTGAGGGAGGAAATTAGAGTGAGGAGGGTAACGAGAGCTGCCAACTCCCTCCCTTGGTTGGGAACCGGTTGTTGGGCAGCCAGACACTCGTGTGCCAGTGGCATTTAAAGAACCCAGCACTGAGTGGGCTGGAGCAACCTGGCCAACAGGATAGCAAGTTCTCAGTGCCATTCATGTGTTTGCTGGAAGAAATCCTCACATGCAATGTGAAGGCCTCCTCAGAGCTGGGTCTCCAAGCCTCCATCACAGACATAGCCACGCCCCTAAGAGCTGTCAGCTGAATGAATCTGGGGGGCCAAGGGAGAGCAGATCAGGGCAGGAGACCTACCCACATATTCCAAGCACTGCTGTACTGGCCTAAAAGAAAACAAGCTGAGGTCAGGAGGTCACCCAAGACCACACTAAATCTCAGTTTCTCTGTGAGATGGGGATCAGTGCTTATCAGAGATTCCTGCAAGGTTTTCAGAAAAGTAGGATAGATAATAAGCAAATATTAGATTTTTTTCAGTCCCTTAGCTTGATGATGATGATGGCGGCGATGATGATGGTGATGGCAATGATGATGGTGATGGTGATGATGATGATGATGATGATGATAATGATGATGGTGGTGGTGATGGTGATGGTGATGATTGATGATGGTGGTGGTGGTGGTGGTGGTGATGGTGATGGTGGTGATGGTGATGGTGATGATTGATGATGGTGGTGGTGATGATGATGATGGTGGTGATGATGATAGAATTGATCATGCCAGGTGTACTGGCAAATACTTCAAATCCCAGCACTTGAGAAACAGAGGAAAGTGGATCTTTGTGAGTTCAAGGCCAGCCTGTCTACAGTGAATTTCAGACCAGCCAAGGCTATGTACTAAGACCTTGCCTTAAAAAATATTGATCTTCCCTAAGTGAGGGGGGCACACGCCTTAAATCCTAGCCCTCAGGAGGCAGGGGAGGCAGATCTCTGTGAGTTTGAGGCCGGCCTGGTCTACAGAGTGAAGTGGGGGATCCTGTTTTTGCCTATGAGGTGGGTCCCACAGGCAGGATAGTGTTGGTCACACGCTATACTTGTGGCACTGATTTTGGTAACGAAGTCTAGGCTTAACTCTTTTTTCTCTTTTTTTCTAGCGTTAGCTTTGAACTGTTTTGTTGAGCTTACAGGGGACACTCACCCTTCGTCCAGGCACTTGCTTTCTAAGGTAGTCTTACTAGGGGTCCTTTTGAGTCTTCTCGAGGGCGAATCTTCCCTCAGATAAAGCTTATTTTTACTACAGATGCTTCTCCGACTCCCAGTCCATGCACTGGGCCAGCCCTGCCTTGGACCTGCTTTCTAGAAGGTCTCTATTTAGAAAGAGCCCAGTTTTGGATCCTCTGAGGGCTTTGTCTTCTCTGTGAACCATCTGTTCACTGAAGGGCGCCCTACAAGCAGGCACTGCAGGAGCCGGCACAGTGAGCTTCAAGTGAGGCTGCCTGTCTCTGCACTACTTCCCGTGGCTCTTGCCCGAGGCCTGACTCTGAGTCATTTCATGCCTCTTAGAGCAAGGTCCCAAGCCTGGCTGTATCAGTACCAACTGCAAATTAATCAGAAAACAGGGTCATGACTCCAACCCCAGACCTGAGAAATCTAGAAACTCAGGGTTAGACTACAGGGTTGACTGTGTACAAAAGAACCTTTCAAGGATTCTGTTGCCCTCACTCCCCAAGTTTGGCAAATTTTGCTTTACTGAGCTGTGATTGGCTACTGACCCCAGCTATAATTAGCTACTGACCCCATAGAGAATAAATGTGCTGGTGTCAATGCAGGTCCACTCTGATTTGGATACCTTAGACTGCGAAGGTCTAGATGTTTAGCAGACTAGGGCAGTGGGGAACTAGAGGGCTTCTCTTCCCAGTTCGTGAGCCGCCTTCTGACTATCTGCTCCATTGCCCTAACTTTGCTGCACAGCACAGTCCAATGGTGGCACACCATCCTTCATTCGCGCTCTTTCCCGTTCTAGCTTGCTGGGGACACTCTCCTTTTCTATATAATTTTGTTTCCATGGTAACTGATTTGTATTCTGTTTATGGATGCTGCAAATGCTGATTTGGCTGCTCTCAACTTTAAGTGAGTACCACTCTGTGTATACTAGAATATTGTACAATATTTGACACTTGGGCCCTTTCTGGAATTTTCCATACTGTATTTCTTCCATCTCCTTTAGGGCTTCAGTTCTTGCTACAAAAGAATTGATAAGCCCAAGTAGAAGATACCAAGATGTCTGGCCTGAAAACACTGGGTGCTGGGGTACTCGAGCGGTGGAGAGGGTAGCCCCTCATGGTACTTCTTGCCTGGCTTACCTGTCCATAATATTGATTGGGCATCATGTTTCCTCATGAGGAGAGGCAATAGATCTCCTGGCTTCTTATATGTGATGCTTTCTTCAGGATGACCTTGGGGGTGTAATGCCCTTGGGACTGCTCTGCCCTGGGTCAACCCTGATCCACTTAGCCCAGGATTGATCAACTTCTATGATCATACCTAGTCTTGTGGGCAACTTGCTAGAGGCCAGGCAAAGACTCAGGATTAGGTTCTTTGTGTTGGGTGTCCATCCAAAGGTAGACAGCCAGCAGGAGCAAATGGGGCTTCTACAACACTCCAGACTATAGCACAAGCCCCCAAAGCACAGAGGAGCTACTTGGAGGAGGAAGGGAAGAAGCCAATCTCCCCACCATCCCCACCCATGCAGTCTAGAGGAGCAGATTAGGCAAGCAGTGCTCTTCCAAAGCCAGGTTTATGATGAGTGGCCACATCCCCTGGGGAGCCTGACCCTGTGTTAAGATGCTCCAGTTACATTTAGGGACACTGAGGTCAGGGAGAGGGGTTGCTTAGCAAGGGACACAGAGTGAACTACTGGTAGCAAGAAGCTCTTTCGGGCTTCTGATTCTCCTTCAGATGGAGGAGGGCGGAAAGAAGGGTCCATAGATGAAAACTGGGCAGGGATGAGAGGCTTAAAGTCTCTCTACCAGCATCCTGGTGTGGGATCATGGCTCCAAGTATAAGCTCTGAAACCTTAGGTAGCCTCAGTTATTTCAATCTGTAAAATGGGGATGCTTTGTGGACATTTTAGGAACTGAACAAATGAATACATTGTCAAGAGTTATGCACTGGCATAATGCATGACATGGAATTAGCTCTGGGAACAATTTTGAATGTTTGACAGCATGGACCACCTAGCACCCAGCAGGGACTAAGAACACGTACTCTTCACTGTCCAGCACCAGGTTGCTCACTTGCGTTGTTAGAAGTAGCTGTTGGTCCTCAGGATGAGGTCTTCTGCACTGACCCAGGTGCTCCCTGTGAGTCATGGGAGCAGAGCGGGAAGGTGAAGGCAGTAGGAGAGATCAGGAGGAGGTGGGAACAATGGGGGGCCCTTAGAGGCTGGAGGCTGTGCATCTGGAAACCACTGATCCCACCCCATCTTCTGTGTCTTCTCTAG
Seq C2 exon
TGAATACAACCACTGTCAACGACTCAGCCCTGCTGGTGCCAAACACCAACATGTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010378:ENSRNOT00000014249:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(17.5=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(3.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]