RnoALTA0037164-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000010378 | Slc4a5
Description
solute carrier family 4 member 5 [Source:RGD Symbol;Acc:1303009]
Coordinates
chr4:114969475-114973940:+
Coord C1 exon
chr4:114969475-114969746
Coord A exon
chr4:114973882-114973908
Coord C2 exon
chr4:114973909-114973940
Length
27 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTC
5' ss Score
5.3
3' ss Seq
ATCTTCTGTGTCTTCTCTAGTGA
3' ss Score
9.98
Exon sequences
Seq C1 exon
GGCCAATGGCCTGGACTACATGGAGTTCCGCCTCTGGATTGGTCTTCACTCAGCCATCCAATGCCTTATCCTGGTGGCCACAGATGCCAGCTTTATCATCAAGTATATCACCCGCTTCACCGAAGAGGGCTTCTCCACCCTCATCAGTTTCATCTTCATCTACGACGCCATCAAAAAGATGATTGGTGCCTTCAAATACTATCCCATTAACACGGACTTCAAGCCCGACTCCATCACCACCTACAAATGCGAGTGCGTCGCTCCTGACACAG
Seq A exon
TGAATACAACCACTGTCAACGACTCAG
Seq C2 exon
CCCTGCTGGTGCCAAACACCAACATGTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010378-17-26,17-25-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(17.5=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(3.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGCCTTCAAATACTATCCCA
R:
CAGACATGTTGGTGTTTGGCAC
Band lengths:
119-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]