MmuALTA1041129-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000068323 | Slc4a5
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 5 [Source:MGI Symbol;Acc:MGI:2443220]
Coordinates
chr6:83273050-83277571:+
Coord C1 exon
chr6:83273050-83273321
Coord A exon
chr6:83277513-83277539
Coord C2 exon
chr6:83277540-83277571
Length
27 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACC
5' ss Score
6.54
3' ss Seq
ATCTTCTGTGTCTTCTCCAGTGA
3' ss Score
10.1
Exon sequences
Seq C1 exon
GGCCAATGGCCTGGACTACATGGAGTTCCGCCTCTGGATTGGTCTTCACTCAGCCATCCAGTGCCTTATTCTGGTGGCCACAGATGCCAGCTTTATCATCAAGTATATCACCCGCTTCACCGAAGAGGGCTTCTCCACCCTCATCAGCTTCATCTTCATCTACGACGCCATCAAAAAGATGATTGGTGCCTTCAAATACTATCCCATTAACACGGACTTCAAGCCTGACTTCATCACCACCTACAAATGCGAGTGCGTCGCTCCTGACACAG
Seq A exon
TGAACACAACCACGGTCAATGCCTCAG
Seq C2 exon
CCCCACTGGCACCAAACACCAACACGTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068323-21-32,21-31-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(17.5=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(3.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGCCTTCAAATACTATCCCA
R:
TGTTGGTGTTTGGTGCCAGTG
Band lengths:
113-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types