GgaALTA1029708-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000013515 | SLC4A5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr22:2845280-2848281:-
Coord C1 exon
chr22:2848010-2848281
Coord A exon
chr22:2845315-2845341
Coord C2 exon
chr22:2845280-2845314
Length
27 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
AACAAACTTCTTTCCTGCAGCCA
3' ss Score
8.25
Exon sequences
Seq C1 exon
AGGTAACGGCATCGACTACATGGAGTTCCGCCTCTGGATTGGCTTGCACTCTGCTCTACAGTGCCTTATCCTGGTGGCTACTGACGCCAGCTTCATTATAAAGTACATCACCCGCTTCACAGAGGAAGGCTTCTCCACCCTCATCAGCTTCATCTTCATCTACGATGCCATCAAGAAGATGATAGGGGCCTTTAAGTACTACCCCATCAATTCGGACTTCAAGCCAGACTATGTGACCATGTACAAATGCGAGTGCATTGCTCCTGACCCAG
Seq A exon
CCAACATGACATTGTTCGATGCTTCAG
Seq C2 exon
TTCCAGTAGCACCAAACACCACTAACGCGTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013515-22-22,22-21-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(20.3=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(4.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGCCTTTAAGTACTACCCC
R:
AGACGCGTTAGTGGTGTTTGG
Band lengths:
121-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]